BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38520.1 Length=1993 Score E Sequences producing significant alignments: (Bits) Value Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2 2041 0.0 > Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2 Length=1796 Score = 2041 bits (1105), Expect = 0.0 Identities = 1287/1368 (94%), Gaps = 39/1368 (3%) Strand=Plus/Plus Query 487 AAAAACGGACAAGTTCTATG-T-T-GT--G-G---CGGATGAGATGAGGGATGCTATCTG 537 |||||| ||||||||||||| | | || | | ||||||||||||||||||||||||| Sbjct 397 AAAAACTGACAAGTTCTATGTTGTGGTGGGAGATTCGGATGAGATGAGGGATGCTATCTG 456 Query 538 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCTCGTTCTG 597 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 457 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCACGTTCAG 516 Query 598 CCTCAGATTCTGGTGGCCGCCAAGAGGGTTTGCTCTGGT-TCAGAGACTCCGGC-CAGCA 655 |||| || ||||| ||||||||||||||||||||||||| | ||||||||| || ||||| Sbjct 517 CCTCCGACTCTGGCGGCCGCCAAGAGGGTTTGCTCTGGTAT-AGAGACTCC-GCTCAGCA 574 Query 656 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTAGAGGACCAGAG 715 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 575 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTCGAGGACCAGAG 634 Query 716 CCAGCTCGAGTCTGGCTCTCTTAGCTCCCACGACTCTGGTCCCTTTGGCACCTTTGTTGG 775 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 635 CCAGCTCGAGTCTGGCTCTCTTAGCTCTCACGACTCTGGTCCCTATGGCACCTTTGTTGG 694 Query 776 CGTCTACGACGGCCACGGTGGGCCTGAGACATCTCGCTTCATCAATGATCATATGTTCCA 835 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 695 CGTCTACGACGGCCACGGTGGCCCTGAGACTTCTCGCTTCATCAATGATCATATGTTCCA 754 Query 836 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATaaaaaaaGC 895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 755 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATAAAAAAGGC 814 Query 896 GTTCCAAGCCACTGAAGAAGGCTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 955 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 815 GTTCCAAGCGACTGAAGAAGGGTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 874 Query 956 TCAGATAGCCACAGTGGGATCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTATA 1015 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 875 TCAGATAGCCACTGTGGGGTCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTCTA 934 Query 1016 CGTGGCCAACGCAGGGGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACAGGTGA 1075 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 935 CGTGGCCAACGCAGGTGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACCGGTGA 994 Query 1076 AGCTCATGCCACTCAGCTCTCAGCAGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1135 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 995 AGCTCATGCCACTCAGCTCTCAGCCGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1054 Query 1136 ACTTCAGGCCCTGCATCCGGATCATCCAGATATTGTGGTTCTGAAACATAACGTCTGGCG 1195 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1055 ACTTCAAGCCCTGCATCCGGATCATCCGGATATTGTGGTTCTGAAACATAACGTCTGGCG 1114 Query 1196 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAAAGGTCAGA 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1115 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAACGGTCAGA 1174 Query 1256 GTTCAACAGGGAACCACTGTATGCAAAATTCCGGCTGAGGTCACCGTTCAGCAAGCCATT 1315 ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1175 GTTCAACAGGGAACCGCTGTATGCAAAATTCAGGCTCAGGTCACCGTTCAGCAAGCCATT 1234 Query 1316 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1235 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1294 Query 1376 ATGTGCATCAGATGGACTGTGGGAACATATGAGCAACCAAGAAGCAGTAGACATAGTCCA 1435 |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1295 ATGTGCTTCAGATGGACTGTGGGAACATATGAGTAACCAAGAAGCAGTAGACATCGTCCA 1354 Query 1436 GAATCATCCGCGAAACGGGATAGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1495 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1355 GAATCATCCGCGAAACGGGATTGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1414 Query 1496 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1415 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1474 Query 1556 TTTCCACGATGACATAACAGTGATTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1615 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1475 TTTCCACGATGACATAACAGTGGTTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1534 Query 1616 AAG-TATGTTGAGAGGACCAGCCGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1674 ||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1535 AAGCT-TGTTGAGAGGACCGGCGGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1593 Query 1675 ACACCCTGGCGCCTTGCACCACGCCCACTCAAGCTGCTGCTGCTGGCGCCTCCTGACTAT 1734 |||| ||||||||| ||||||||| || |||||||| | ||||||| ||||||| | | Sbjct 1594 ACACATTGGCGCCTTACACCACGCCAACGCAAGCTGC-G--GCTGGCGGCTCCTGA-T-T 1648 Query 1735 TGAATTTTTACGGTGTCCTTAAAATTCTTTCCAAGATCCTTCCTGTAACtatatataaat 1794 | | |||||||||||||| |||||||||||||| | ||||||||||||| || Sbjct 1649 T---T----ACGGTGTCCTTAAA-TTCTTTCCAAGATC-T----GTAACTATATATATAT 1695 Query 1795 at---at-at-att-tgattattattatCATTGACTGGGAAAGGATAT 1836 || || || ||| | || |||||||||||||||||||||||||||| Sbjct 1696 ATTTGATTATCATTATTATCATTATTATCATTGACTGGGAAAGGATAT 1743 Score = 95.3 bits (51), Expect = 2e-18 Identities = 124/155 (80%), Gaps = 21/155 (14%) Strand=Plus/Plus Query 137 TCTTCTTCTTCCTCATCCGCTCGCTTATATTTA---ATTT-AATAATAATAAAAATCGGT 192 |||||||||||||||||||||||||||| ||| |||| |||||||||||||||| | Sbjct 1 TCTTCTTCTTCCTCATCCGCTCGCTTATTTTTCTTTATTTTAATAATAATAAAAATCA-T 59 Query 193 -GTTCATTTTTATATAAAAGTATAAATTTTGTGTTTGGTTGATCCATCCGTAGTCGTAGT 251 | | |||| |||||| | | || || ||| ||||||||||||||| | |||| Sbjct 60 CGGTG-TTTT-ATATAAT--T-TC--TTCTG-GTT-GGTTGATCCATCCGT--T-GTAG- 106 Query 252 AGATCTACAAGCTCTGAAATTCCACGCCCACATCT 286 | ||||||| ||| |||||||||||||||||||| Sbjct 107 A--TCTACAAACTCAGAAATTCCACGCCCACATCT 139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74923511915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5