BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38540.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490619 jgi|Araly1|490619|fgenesh2_kg.7__52__AT4G38540.1 1893 0.0
Ahg887647 jgi|Araly1|887647|Al_scaffold_0020_7 69.4 7e-11
> Ahg490619 jgi|Araly1|490619|fgenesh2_kg.7__52__AT4G38540.1
Length=1295
Score = 1893 bits (1025), Expect = 0.0
Identities = 1194/1274 (94%), Gaps = 18/1274 (1%)
Strand=Plus/Plus
Query 30 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCAGCCCAGA 89
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAAACAGAGCTTTCTTTCTAAGATCATCAACGCACCATGGAAGAAGAAGGCACCCCAGG 60
Query 90 TATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGGCT 149
||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 61 CATCATCATCGTCGGCGCCGGAATCTCCGGGCTTTCCACAGCTGTTGGACTACACAGGCT 120
Query 150 TGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGATTTGCAT- 208
||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||| |
Sbjct 121 TGGGATCAGGAGCATGGTGCTGGAATCTTCAGAGAAACTGAGAGCGACAGGGTTTGC-TC 179
Query 209 TTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCAGCATATTC 268
|||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 180 TTACGACTTATTTCAATGCTTGGAAGGCCATGGAAGCTCTCGACGTTGCTCAGCATATTC 239
Query 269 GCAGTCTCCATGATCGCCTTGAAGGATGGGTGGTTGGAACAATTTCTGCAGGAACTCCTC 328
|||||||||||||||| ||| ||||||||||||||||| |||||||||||| || |||||
Sbjct 240 GCAGTCTCCATGATCGTCTTCAAGGATGGGTGGTTGGACCAATTTCTGCAGCAAATCCTC 299
Query 329 CCACAGAGATGCTGTTTCCAGAATCCGAAGAATATGAGTCTCGATGCGTACAGAGGAAGC 388
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 CCAAAGAGATGCTGTTTCCAGAATCCGAAGAATACGAGTCTCGATGCGTACAGAGGAAGC 359
Query 389 TGTTGTTAGAGGCTCTAGCAGGTGAGTTGCCTGAAGAGACCATCAGGTTTTCGTCTAAGG 448
|||||||||||||||||||||||||||| ||| ||||| | || |||| |||||||||||
Sbjct 360 TGTTGTTAGAGGCTCTAGCAGGTGAGTTACCTCAAGAGTCTATAAGGTATTCGTCTAAGG 419
Query 449 TTGTTCATATTGAAT-TGTCTGGATGCTACAAGAAGGTTCATCTCTCCGACGGGACCATT 507
|||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 420 TTGTTCATATCG-ATCTGTCTGGACGCTACAAGATGGTTCATCTCTCCGACGGGACCATT 478
Query 508 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCAGTGGTTGGTAAGTGGCTA 567
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 CTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCGGTGGTTGGTAAGTGGCTA 538
Query 568 GGCTTCAAAAATCCCGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTTCCG 627
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 GGCTTCAAAAATCCGGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTCCCG 598
Query 628 GAAGGCCATGGATTTGGGAAAAGGTTCTTCCAGTTTTATGGAGACGGCGTTCGTTCCGGT 687
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 599 GAAGGCCACGGATTTGGGAAAAGGTTATTCCAGTTTTATGGAGACGGTGTTCGTTCGGGT 658
Query 688 TTTATCCCATGTGACCACAACACTGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 747
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTATCCCCTGTGACCACAACAATGTCTACTGGTTCCTAACCCACACCTCCACTGATATA 718
Query 748 GATGAGGAGACAAATTCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAAGACTTG 807
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 GATGAGGAGACAAATCCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAGGACTTG 778
Query 808 CCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTCTCAA 867
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 779 CCTGAAAACATTAAGAATGTGGTGGAGACCACCGATCTTGATAGCATGGTGATGTCTCGA 838
Query 868 CTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGTGTGC 927
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 839 CTGAAGTACCGGCCTCCATGGGAACTGCTCTGGTCAAACATCACAAAAGACAATGTGTGC 898
Query 928 GTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTCAGCC 987
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 GTTGCAGGGGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGGGGTTGCTCAGCA 958
Query 988 ATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAGTCTg 1047
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 959 ATGGAGGATGGAGTCATCCTCGCTCGTTGTCTAGGTGAAGCGATAAAAGCAAAGAATCTG 1018
Query 1048 aaaggtgaaacagaagaaaatgaagaagagggttataagaggattgaagaaggtttgaag 1107
|||||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 1019 AAAGGTGAAACAGAAGAA---GA-GA-G----TTATAAGAGGATTGAAGAAGGTTTGAAA 1069
Query 1108 aagTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTTATAACAACGGCATATACAGTA 1167
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1070 AAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTGATAACAACGGCATATACAGTA 1129
Query 1168 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTCAGAGACAGGTTCCTGTCG 1227
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1130 GGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTGAGAGACAGGTTCTTGTCG 1189
Query 1228 TCTTACCTTTCTA-GGATGCTGCTGAAAAAGTCCCATTTCGATTGCGGAAGCCTTGTCCC 1286
|||||||| || | ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1190 TCTTACCTATC-ACGGATGTTGCTGAAAAAGTCTCATTTCGATTGCGGAAGCCTTGTCCC 1248
Query 1287 ATGATGATTCTCAA 1300
| ||||||||||
Sbjct 1249 --G-TGATTCTCAA 1259
> Ahg887647 jgi|Araly1|887647|Al_scaffold_0020_7
Length=318
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 251 GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGCCTTGAAGG 293
|||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 86 GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGTCTTCAAGG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5