BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38550.1 Length=2251 Score E Sequences producing significant alignments: (Bits) Value Ahg943817 jgi|Araly1|943817|scaffold_700046.1 2865 0.0 > Ahg943817 jgi|Araly1|943817|scaffold_700046.1 Length=1895 Score = 2865 bits (1551), Expect = 0.0 Identities = 1765/1867 (95%), Gaps = 19/1867 (1%) Strand=Plus/Plus Query 148 CTCAACCCAATATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATAGCAAAAAATCAT 207 ||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 11 CTCCACCCAACATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATGGCAAAAGATCAT 70 Query 208 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCC 267 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCT 130 Query 268 CCGGCGCTAGATCCCCGCCCCCATCGTATCTTTCAAACAAAAGAGCCGAAACAGAGTACG 327 |||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 131 CCGGTGCTAGATCCCCGCCACCATCGTATCTCTCCAACAAAAGAGCCGAAACAGAGTACG 190 Query 328 ATTTCCCCATGTCCAATGAACAAAGACCATACTGGAAACAGCCTGCCTCTGAACGCGTCC 387 ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 191 ATTTCCCCACCTCCGATGAACAAAGACCCTACTGGAAACAGCCTGCCTCTGAACGCGTCC 250 Query 388 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGACCATCGTCGAGACC 447 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 251 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGAGCGTCGTCGAGACC 310 Query 448 ACGGTAGAGAAAGAATGGAGGCCATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 507 |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 311 ACGGTAGAGACAGAATGGACGCGATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 370 Query 508 CATATCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAAATCAACCGAGTATCGTC 567 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 371 CATTTCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAGATCAACCGAGTATCGTC 430 Query 568 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCGAGCCCATTTCACC 627 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 431 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCAAGCCCATTTCACC 490 Query 628 CATTCAGAAGCCCTTCTCCATCTCCATTCCACACGCCTGATCG-C-C---G----C---A 675 ||||||||||||||||||||||||||| ||| ||||||||||| | | | | | Sbjct 491 CATTCAGAAGCCCTTCTCCATCTCCATACCAAACGCCTGATCGCCGCAGAGACCACGATA 550 Query 676 GAGACCACTACGA--C-ATGTATGAGCCTGAGGCCAACACCATGCTGCAGAATAGCGCTC 732 ||||||||||||| | ||||| || |||||||||||||| |||||||||||||||||| Sbjct 551 GAGACCACTACGACGCAATGTACGAACCTGAGGCCAACACTTTGCTGCAGAATAGCGCTC 610 Query 733 CAGGGAGCCCATTCCATCCAGCTGGAAGCCGCTCTCCACCACCATACAGAACGCCTGATC 792 | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 611 CGGGGAGCCCATTTCATCCAGCTGGAAGCCGCTCTCCACCGTCATACAGAACGCCTGATC 670 Query 793 GTCGTAGTAACT-ATGATAAAGAGCAATTTGAGGACCTGTACGAGCAAGATGGTGATGTC 851 | |||||||| | ||| ||||||||||| ||||||||||||||| |||||||||||||| Sbjct 671 GCCGTAGTAA-TCATGGTAAAGAGCAATATGAGGACCTGTACGACCAAGATGGTGATGTT 729 Query 852 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 789 Query 912 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCAAGATGACGATGTA 971 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 790 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCCAGATGATGATGTA 849 Query 972 ACACCACGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCATTCACCACCA 1031 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 850 ACACCGCGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCGTTCACCACCA 909 Query 1032 CCACCACAACCATACAGAACGCCTGACCATCGTAGAAGCCACCAGGATAACGAGGATTTC 1091 |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||| Sbjct 910 CCACCACAACCATACAGAACGCCTGACCGTCGTAGAAGTCACCAGGATAATGAGGAATTC 969 Query 1092 GAGGCAATGTATGAGCTAGATGGCGACTTAATACAC-CAGAAGAGCGCTCCTCCGAGTCC 1150 ||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| Sbjct 970 GAGGCAATGTATGAGCTAGATGGCGACGTAATAC-CGCAGAACAGCGCTCCTCCGAGTCC 1028 Query 1151 CGTTCATGGACCATACTATTCATCCAGCGACGACGATAATCACTCCACCTACCTCTATCC 1210 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1029 AGTTCGTGGACCATACTATTCATCCAGCGACGACGATAACCACTCCACCTACCTCTATCC 1088 Query 1211 AGAAATCCGCAGCCCACTTCGTTCCAGGATCGTATCCGAGAACAGCACGCCTGTTCACCA 1270 ||||||||| |||||||| ||||||||| ||||||| |||||||||||||| || ||||| Sbjct 1089 AGAAATCCGTAGCCCACTACGTTCCAGGCTCGTATCAGAGAACAGCACGCCGGTGCACCA 1148 Query 1271 CAACTACCAGATAGTTGCGGCCGAGACCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1330 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1149 CAACTACCAGATAGTTGCGGCCGAAAGCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1208 Query 1331 GCTGCCTGACGAGTCACAAAGCTTCACAATGCAGGAGATTACCAAAATGCGAGGACTCAA 1390 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1209 GCTGCCTGACGAGTCACAGAGCTTCACAATGCAAGAGATTACCAAAATGCGAGGACTCAA 1268 Query 1391 GAACTACGAAAGCGGCAAGGAAGAGAGTCAATCAATGATATCCGAGGCTTACGTATCCGT 1450 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1269 GAACTACGAAAGCGGCAAGGAAGAGAATCAATCAATGATATCCGAGGCTTACGTATCCGT 1328 Query 1451 CGCGAATTACAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1510 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1329 CGCGAACTATAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1388 Query 1511 CGGCGACATCGCAGCCTCCTCGAAGCTGCAAGCAATGGCAACTCGGTCTTATTACCTGGA 1570 ||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1389 CGGAGACATCGCCGCCACCTCGAAGCTGCAAGCAATGGCAACTCGGTCGTATTACCTGGA 1448 Query 1571 ATCCCTAGCCGCTGTGGTGATGGAGCTGAAAAAGACGGTTCTGAGGGATTTGACGAAAAC 1630 |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1449 ATCCCTAGCCGCGGTGGTGATGGAGCTGAAGAAGACGGTTCTGAGGGATCTGACGAAAAC 1508 Query 1631 GCGCGTGGCGGAGATCGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1690 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1509 GCGCGTGGCGGAGATGGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1568 Query 1691 GTGGCTAAAGACAGCGGTAACGGAACTGGCGGAGGCGGTGGAGTATTTCGGGCAGTACGA 1750 |||||| ||||||||||| |||| ||||||||||| |||||||| |||||||||||||| Sbjct 1569 GTGGCTGAAGACAGCGGTGGCGGAGCTGGCGGAGGCAGTGGAGTACTTCGGGCAGTACGA 1628 Query 1751 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAAAAGGGGGAGAT 1810 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1629 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAGAAGGGGGAGAT 1688 Query 1811 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1689 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1748 Query 1871 GGTGACGGTGGTCGCAGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1930 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1749 GGTGACGGTGGTGGCGGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1808 Query 1931 GAATCTCGACCTCTTCCAGTCCAAAGTCCACAAATTCCAAGGAGAAGCCGTCCTTCTCCA 1990 ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| Sbjct 1809 GAATCTCGACCTCTTTCAATCCAAAGTCCACAAATTCCAAGGACAAGCCGTCCTTCTCCA 1868 Query 1991 CCTTTAG 1997 | ||||| Sbjct 1869 CGTTTAG 1875 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84750795125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5