BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38580.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490624 jgi|Araly1|490624|fgenesh2_kg.7__57__AT4G38580.1 957 0.0
> Ahg490624 jgi|Araly1|490624|fgenesh2_kg.7__57__AT4G38580.1
Length=733
Score = 957 bits (518), Expect = 0.0
Identities = 600/637 (94%), Gaps = 16/637 (3%)
Strand=Plus/Plus
Query 1 AATTCATCATTTACTTCTTTACACCTCCACTTTCCCTTTTGCCCCTCTT-TTTTACAGAT 59
||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct 1 AATTCATCATTTACTTCTTTACACCTCCACTTTCCTTTTTG-CCCTCTTATTTT--TGAG 57
Query 60 TTCActctctgctctactactctctcctcctcctcctcctAAAGAAAGTTCTTAACTCTC 119
||| |||||| ||||||| || || || ||||||||||| ||||||||| |||||||||
Sbjct 58 TTCTCTCTCTACTCTACT-CT-ACT-CT-CTCCTCCTCCTTAAGAAAGTTTTTAACTCTC 113
Query 120 CTGGGTTCTTCAGGTTTTTC-----CTTTTCT-GGAATAAAAAGAAGAAGAAATGGGTGT 173
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 114 CTGGGTTCTTCAGGTTTTTCTTTTTTTTTTTTGGGAATAAAAAGAAGAAGAAATGGGTGT 173
Query 174 TCTTGATCATGTCTCTGAAATGTTTGACTGCTCTCATGGTCACAAGATTAAAAAGCGCAA 233
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 174 TCTTGATCATGTCTCTGAAATGTTTGACTGCTCTCATGGTCACAAAATTAAAAAGCGCAA 233
Query 234 ACAGTTGCAGACGGTGGAGATTAAAGTGAAAATGGACTGCGAAGGTTGCGAGCGGAAAGT 293
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACAGTTGCAGACGGTGGAGATCAAAGTGAAAATGGACTGCGAAGGTTGCGAGCGGAAAGT 293
Query 294 GCGGCGTTCTGTCGAAGGCATGAAGGGTGTGTCTTCTGTGACGTTGGAGCCCAAAGCC-C 352
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 294 GCGGCGTTCTGTGGAAGGCATGAAGGGTGTGTCTTCTGTGACGTTGGAGCCCAAAGCCTC 353
Query 353 ATAAAGTCACTGTAGTCGGCTACGTCGATCCCAACAAGGTGGTGGCTCGAATGTCTCACA 412
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 354 A-AAAGTCACTGTGGTCGGCTACGTCGATCCCAACAAGGTGCTGGCTCGAATGGCTCACA 412
Query 413 GGACCGGCAAGAAAGTCGAGCTCTGGCCATATGTGCCCTACGACGTGGTCGCTCATCCTT 472
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGACCGGCAAGAAAGTCGAGATCTGGCCATATGTGCCCTACGACGTGGTCGCTCATCCTT 472
Query 473 ACGCTGCCGGTGTCTACGACAAGAAGGCACCCTCCGGTTATGTCCGAAGAGTCGACGACC 532
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 473 ACGCTGCCGGTGTCTACGACAAGAAGGCACCCTCCGGTTATGTCCGAAGAGCCGACGACC 532
Query 533 CCGGAGTGTCGCAGCTGGCTCGTGCTAGCTCCACCGAGGTCCGCTACACCACTGCATTTA 592
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 533 CTGGAGTGTCGCAGCTGGCTCGTGCTAGCTCCACTGAGGTCCGCTACACTACTGCATTTA 592
Query 593 GCGACGAGAACCCGGCGGCTTGTGTGGTCATGTGATG 629
|||||||||||||||||||||||||||||||||||||
Sbjct 593 GCGACGAGAACCCGGCGGCTTGTGTGGTCATGTGATG 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5