BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38620.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1 1770 0.0
Ahg944399 jgi|Araly1|944399|scaffold_700628.1 307 1e-82
Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1 183 2e-45
> Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1
Length=1286
Score = 1770 bits (958), Expect = 0.0
Identities = 1197/1301 (92%), Gaps = 61/1301 (5%)
Strand=Plus/Plus
Query 1 ATCATCTAGAAGC-A-TTTGTGtat-a-tatatatatGTGTGTATATTCC-TCTCTAGCT 55
||||||||||||| | ||||| ||| | ||||||||| |||||||| ||| | | |||||
Sbjct 1 ATCATCTAGAAGCAATTTTGTATATAACTATATATATATGTGTATA-TCCATGTGTAGCT 59
Query 56 TTAAGTCAAAACCCTATATAAACTATACACCAAAGCTTTGAACCTTCAACCAAACCCAAA 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAAGTCAAAACCCTATATAAACTATACACCAAAGCTTTGAACCTTCAACCAAACCCAAA 119
Query 116 ATCCAAGTGCCCCACCAAATGCTTCAATCCTCTTCCACTACACaaaaaaaCAACTTAATC 175
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 ATCCAAGTGCCCCACCAAATGCTTCAATCCTCTTCCACTACACAAGAAAACAACTTAATC 179
Query 176 CCTTTATACCCTTTTAGCCAAAACCCTCGCTAAAAGCCAATCCCTCAATATAAAATAACA 235
|||||||||||||||||||||||||||| |||||||||||| | | ||||| |||||||
Sbjct 180 CCTTTATACCCTTTTAGCCAAAACCCTCACTAAAAGCCAAT--C-C-ATATATAATAACA 235
Query 236 AGTAGAATTG---AT-CTGCCTATATATAAGATTTTG---------AGA-C--GAAATAA 279
|| ||||||| || ||||||||||||||||||||| | | | |||||||
Sbjct 236 AGAAGAATTGATCATACTGCCTATATATAAGATTTTGTATCAATTCACATCAAGAAATAA 295
Query 280 GATCTAAACCACAAGAAAG-AAAG--------TAAACATAAAAGTATGGGAAGGTCACCG 330
||||||||||||||||||| |||| ||| | |||||||||||||||||||||
Sbjct 296 GATCTAAACCACAAGAAAGAAAAGAAAAAAAAAAAAAAAAAAAGTATGGGAAGGTCACCG 355
Query 331 TGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAAGAGGACGAGAGGCTC 390
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAAGAGGACGAGAGGCTC 415
Query 391 GTCGCCTACATTAAAGCTCATGGAGAAGGCTGCTGGAGATCTCTCCCCAAAGCCGCCGGA 450
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATAGCTTACATTAAAGCTCATGGAGAAGGCTGCTGGAGATCTCTCCCCAAAGCCGCCGGA 475
Query 451 CTTCTTCGCTGTGGCAAGAGCTGCCGTCTCCGGTGGATCAACTATCTCCGGCCTGACCTT 510
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTTCTTCGGTGTGGCAAAAGCTGCCGTCTCCGGTGGATCAACTATCTCCGGCCTGACCTT 535
Query 511 AAGCGTGGAAACTTCACCGAGGAAGAAGACGAACTCATCATCAAGCTCCATAGCCTTCTT 570
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 AAGCGTGGAAACTTCACCGAGGAAGAAGACGAGCTCATCATCAAGCTCCATAGCCTTCTT 595
Query 571 GGCAACAAATGGTCGCTTATTGCCGGGAGATTACCGGGAAGAACAGATAACGAGATAAAG 630
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 596 GGCAACAAATGGTCGCTTATTGCCGGGAGATTACCGGGAAGAACAGATAACGAGATTAAG 655
Query 631 AACTATTGGAACACGCATATACGAAGAAAGCTTATAAACAGAGGGATTGATCCAACGAGT 690
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 AATTACTGGAACACACATATACGAAGAAAGCTTATAAACAGAGGGATTGATCCAACGACT 715
Query 691 CATAGACCAATCCAAGAATCATCAGCTTCTCAAGATTCTAAACCTACACAACTAGAACCA 750
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 CATAGACCAATCCAAGAATCATCAGCTTCTCAAGATTCTAAGCCTACACAACTAGAACCA 775
Query 751 GTTACGAGTAATACCATTAATATCTCATTCACTTCTGCTCCAAAGGTCGAAACGTTCCAT 810
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 GTTACGAGTAACACCATTAATATCTCCTTCACTTCTGCTCCAAAGGTCGAAACGTTCCAT 835
Query 811 GAAAGTATAAGCTTTCCGGGAAAATCAGAGAAAATCTCAATGCTTACGTTCAAAGAAGAA 870
|| |||||||| ||||| | |||||||| |||||||||||||||||||| |||
Sbjct 836 GAGAGTATAAGTTTTCC---A------GAGAAAATATCAATGCTTACGTTCAAAGAGGAA 886
Query 871 AAAGATGAGTGCCCAGTTCAAGAAAAGTTCCCAGATTTGAATCTTGAGCTCAGAATCAGT 930
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAAGACGAGTGCCCAGTTGAAGAAAAGTTCCCAGATTTGAATCTTGAGCTCAGAATCAGT 946
Query 931 CTTCCTGATGATGTTGATCGTCTTCAAGG---G------CATGGAAAGTCAACAACGCCA 981
|||||||||||||| ||||||| |||||| | || ||||||||||||||||||
Sbjct 947 CTTCCTGATGATGTCGATCGTCGTCAAGGCTTGGTGGGACACGGAAAGTCAACAACGCCA 1006
Query 982 CGTTGTTTCAAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGTTGTTTCAAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATG 1066
Query 1042 AGATGCGATGTAGTCGGAGGTAGCAGCAAGGGGAGTGACATGAGCAATGGATTTGATTTT 1101
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1067 AGATGCGATGTAGTTGGAGGTAGCAGCAAGGGGAGTGACTTGAGCAAGGGATTTGATTTT 1126
Query 1102 TTAGGGTTGGCAAAGAAAGAGACCACTTCTCTTTTGGGCTTTCGAAGCTTGGAGATGAAA 1161
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1127 TTAGGGTTGGCAAAGAAAGAGACCACTTCTCTTTTGGGGTTTCGAAGCTTGGAGATGAAA 1186
Query 1162 TAAT-A-T-T-GTCAAATTTTAGGCGTAACTGTACAAAACTTTTGCCTAGATAATTTGAA 1217
|||| | | | ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1187 TAATTAATATTGTCAAATTT-AGGCGTAACTGTACAAAACTTTTGCCTAGATAATTTCAA 1245
Query 1218 AGTATATCTTC---AACTTGTATGAGAAATTTAACTGGTGA 1255
|||| |||||| ||||||||||||||||||||||| |||
Sbjct 1246 AGTAAATCTTCTTCAACTTGTATGAGAAATTTAACTGTTGA 1286
> Ahg944399 jgi|Araly1|944399|scaffold_700628.1
Length=877
Score = 307 bits (166), Expect = 1e-82
Identities = 322/397 (81%), Gaps = 11/397 (3%)
Strand=Plus/Plus
Query 311 AAAGTATGGGAAGGTCACCGTGCTGTGAGAAAG-CTCACACAAACAAAGGAGCATGGACG 369
|||| ||||| ||||| || ||||| ||||||| | ||||| ||||||||||| |||||
Sbjct 17 AAAG-ATGGGGAGGTCTCCTTGCTGCGAGAAAGAC-CACACGAACAAAGGAGCTTGGACT 74
Query 370 AAAGAAGAGGACGAGAGGCTCGTCGCCTACATTAAAG-CTCATGGAGAAGGCTGCTGGAG 428
|| ||||| ||||| | |||| || | |||| | ||| |||| || ||||| || ||| |
Sbjct 75 AAGGAAGAAGACGATAAGCTCATCTCTTACA-TCAAGTCTCACGGCGAAGGTTGTTGGCG 133
Query 429 ATCTCTCCCCAAAGCCGCCGGACTTCTTCGCTGTGGCAAGAGCTGCCGTCTCCGGTGGAT 488
||||| || | | ||||||| |||| || || ||||| ||||| ||||||||||||||
Sbjct 134 TTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGCAAAAGCTGTCGTCTCCGGTGGAT 193
Query 489 CAACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGAGGAAGAAGACGAACTCAT 548
||||||||||||||||| || ||| | || || |||||| |||||||| || |||||
Sbjct 194 TAACTATCTCCGGCCTGATCTCAAGAGGGGTAATTTCACCCTCGAAGAAGATGATCTCAT 253
Query 549 CATCAAGCTCCATAGCCTTCTTGGCAACAAATGGTCGCTTATTGCCG-GGAGATTACCGG 607
|||||| |||||||||||||| |||||||| ||||| ||||| | || |||||||||||
Sbjct 254 CATCAAACTCCATAGCCTTCTCGGCAACAAGTGGTCTCTTATCG-CGACGAGATTACCGG 312
Query 608 GAAGAACAGATAACGAGATAAAGAACTATTGGAACACGCATAT-ACGAAGAAAGCTTATA 666
||||||||||||||||||| ||||| || |||||||| ||| | | || ||| ||| ||
Sbjct 313 GAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGGAA-GCT-ATT 370
Query 667 AACA-GAGGGATTGATCCAACGAGTCATAGACCAATC 702
|| | ||||||||||||| ||| |||| |||| |||
Sbjct 371 AAGAAGAGGGATTGATCCCGCGACTCATCGACCGATC 407
> Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1
Length=609
Score = 183 bits (99), Expect = 2e-45
Identities = 269/348 (77%), Gaps = 24/348 (7%)
Strand=Plus/Plus
Query 316 ATGGGAAGGTCACCGTGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAA 375
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
Query 376 GAGGA-CGAGAGGCTCG-TCGCCTACATTAA--AGCTCATGGAGAAGGCTGCT-GGAGAT 430
|| || | | || | | | ||||| | | || |||| ||||||| || || | |
Sbjct 61 GAAGATCAACTT-CT-GATTGATTACAT-ACGTA-CTAATGGTGAAGGCT-CTTGGCGTT 115
Query 431 CTCTCCCCAAAGCCGCCGGACTTCTT-CGCTGTGGCAAGAGCTGCCG-TCTCCGGTGGAT 488
|||| || ||| ||||||| || || || ||||| || || || | | | |||||||
Sbjct 116 CTCTTCCTAAATCCGCCGGG-TTGTTGCGGTGTGGAAAAAGTTGTAGAT-TAAGGTGGAT 173
Query 489 CAACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGA-GGAAGAAGA-CGAACTC 546
|| ||||| || ||||| ||||| |||||||| ||||| || || ||||| | || ||
Sbjct 174 TAATTATCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGT-GAAGATCAAA-TC 231
Query 547 ATCATCAAGCTCCATAGCCTTCTT-GGCAACAAATGGTCGCTT-ATTGCCGGGAGATTAC 604
|| | || || ||||| || || |||||||||||||| || || || |||| |||||
Sbjct 232 ATTGTTAAACTTCATAGT-TTATTCGGCAACAAATGGTCT-TTGATAGCTGGGAAATTAC 289
Query 605 CGGGAAGAACAGATAACGAGAT-AAAGAACTATTGGAACACGCATATA 651
||||||| |||||||| ||||| ||| |||||||||||||| ||||||
Sbjct 290 CGGGAAGGACAGATAATGAGATTAAA-AACTATTGGAACACTCATATA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5