BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38630.1 Length=1469 Score E Sequences producing significant alignments: (Bits) Value Ahg490627 jgi|Araly1|490627|fgenesh2_kg.7__60__AT4G38630.1 2034 0.0 > Ahg490627 jgi|Araly1|490627|fgenesh2_kg.7__60__AT4G38630.1 Length=1409 Score = 2034 bits (1101), Expect = 0.0 Identities = 1295/1384 (94%), Gaps = 31/1384 (2%) Strand=Plus/Plus Query 79 ACGATGGTTCTCGAGGCGACTATGATATGTATCGACAACTCCGAGTGGATGCGAAACGGA 138 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 49 ACGATGGTTCTCGAGGCGACTATGATATGCATCGACAACTCCGAGTGGATGCGAAACGGA 108 Query 139 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGCGGAGCC 198 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 109 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGTGGGGCC 168 Query 199 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATTTTGACAATGGCTGGCAAAGGAGTT 258 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 169 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATATTGACAATGGCTGGCAAAGGAGTT 228 Query 259 AGAGTATTGACTACTCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 318 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 AGAGTTTTGACTACGCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 288 Query 319 GATGTGGGAGGAGAGATCAACTTAACCGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 378 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 289 GATGTTGGAGGAGAGATCAATTTAACAGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 348 Query 379 CATCGCCAAAACAAGAATCAACGCCAAAGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 438 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 349 CATCGCCAAAACAAGAATCAACGCCAACGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 408 Query 439 TACGAGAAGAAGGCCCTAG-AGATAGTTGGAAAAAGGCTGAAGAAGAATAGTGTCTCTCT 497 ||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| Sbjct 409 TACGAAAAGAAGGCCCTAGAAG-TAGTTGGCAAAAGGCTGAAGAAGAATAGTGTCTCTCT 467 Query 498 TGATATTGTCAATTTCGGGGAGGATGATGATGAGGAAAAGCCTCAGAAACTCGAGGCGCT 557 ||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || Sbjct 468 TGACATTGTCAATTTCGGGGAAGATGATGATGAGGAAAAGCCTCAGAAGCTGGAGGCCCT 527 Query 558 CCTTACAGCTGTGAATAACAATGACGGTAGCCACATTGTTCATGTTCCTTCTGGAGCCAA 617 |||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 528 CCTTACTGCCGTCAATAACAACGACGGTAGCCACATTGTTCATGTTCCATCTGGAGCCAA 587 Query 618 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTATTCACGGGTGATGAGGGTGCAAGTGG 677 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 588 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTCTTCACGGGTGATGAGGGTGCAAGTGG 647 Query 678 CTATGTTTCTGCGGCAGCTGCTGCAGCGGCCGCAGGTGGGGACTTCGACTTTGGTGTGGA 737 |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct 648 GTATGTTTCTGCGGCAGCTGCTGCAGCTGCAGCAGGTGGGGACTTTGACTTTGGTGTAGA 707 Query 738 CCCAAATATCGATCCAGAACTTGCTCTTGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 797 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 708 CCCAAATATCGATCCAGAGCTTGCTCTCGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 767 Query 798 AAGACAAGAAGCTGCTGCCAAGAAGGCGGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 857 ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 768 AAGACAAGAGGCTGCTGCTAAGAAGGCAGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 827 Query 858 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGACAAGAACGCTGAACC 917 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 828 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGAGAAGAACGCTGAACC 887 Query 918 AATGGATGAGGACAGTGCGTTGCTAGATCAGGCAATTGCTATGTCTGTTGGTGATGTGAA 977 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 888 AATGGATGAGGACAGTGCGCTGCTAGATCAGGCAATTGCTATGTCTGTAGGTGATGTGAA 947 Query 978 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1007 Query 1038 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAACCTCTTGGGAAATCAAGCCTT 1097 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1008 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAATCTCTTGGGAGATCAAGCCTT 1067 Query 1098 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTGGATCCAAATGATCCGGCAGTTAAAGA 1157 ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1068 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTAGATCCAAATGATCCAGCGGTTAAAGC 1127 Query 1158 ACTACTAGCGTCTCTGCCAGACGAGTCAAAG---CGTACCGAGGAGGAAGAGAGTAGTAG 1214 | ||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 1128 GTTGCTAGCGTCTCTGCCAGACGAGTCAAAGGTGCGGAACGAGGAGGAAGAGAGTAGTAG 1187 Query 1215 CAAAAAAGGCGAGGATGAGAAGAAGTGAAGAAGGATCTGAGAG-TCTCAATAAAAATTCC 1273 |||| || ||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 1188 CAAA---GGTGAGGATGAGAAGAAGTGAAGAAGGAAGAGAGAGGTCTGAATAAAAATTCC 1244 Query 1274 TCTTGTTTCTTTGGTTTGATAGAGATTGGAACTGAATTTAACTAATCTCTCTGCCTTGTG 1333 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 1245 TCTTGTTTCTTTGGTTTGATAGAGATTGGGACTGATTTTAACTAATCTCTCTGCCTTATG 1304 Query 1334 AAATTTGtttttttctctctctctcGCCTTTTTATAATGTTGTTATTGTACGAGTCAA-G 1392 || ||||||||||| ||||||||||||||||||||||||| | Sbjct 1305 AACTTTGTTTTTTT-------------------ATAATGTTGTTATTGTACGAGTCAAAG 1345 Query 1393 GACTAGCTTCCTTCTTAATTTTTATTGGACTTTATGTC-AATGGG-CTCTTAGAAAGTAA 1450 ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| Sbjct 1346 GACTAGCTTCCTTCTTAATTTTTATCGGACTTTATGTCGAATGGGGCTCTTAGAAAGTAG 1405 Query 1451 GCCT 1454 |||| Sbjct 1406 GCCT 1409 Score = 84.2 bits (45), Expect = 2e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 6 CTAAAATCTAAATCTTGCCTTCCTGACTTTCTCTCTACGACAGAATTT 53 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CTAAAATCTAAATCTTGCGTTCCTGACTTTCTCTCTACGACAGAATTT 48 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54964223535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5