BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38740.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490638 jgi|Araly1|490638|fgenesh2_kg.7__71__AT4G38740.1 856 0.0
> Ahg490638 jgi|Araly1|490638|fgenesh2_kg.7__71__AT4G38740.1
Length=711
Score = 856 bits (463), Expect = 0.0
Identities = 512/536 (96%), Gaps = 1/536 (0%)
Strand=Plus/Plus
Query 104 AACAA-CAAGAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGACGGCCAGCCCG 162
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 25 AACAACCAACAATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGATGGCCAGCCCG 84
Query 163 CGGGAAGGATCGTGATGGAGCTGTACACCGATAAGACTCCCAGGACTGCCGAGAATTTCA 222
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 85 CGGGAAGGATCGTGATGGAGCTGTACACCGACAAGACTCCCAGGACTGCCGAGAATTTCA 144
Query 223 GAGCTCTCTGCACCGGAGAGAAAGGTGTTGGCGGTACCGGAAAACCCCTTCACTTCAAGG 282
||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||
Sbjct 145 GAGCTCTCTGCACCGGAGAGAAAGGAGTTGGCAGTAGCGGGAAACCCCTTCACTTCAAGG 204
Query 283 GATCTAAGTTTCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGAGATTTCACCGCCG 342
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 205 GATCTAAGTTTCACCGTGTGATCCCTAAGTTCATGTGTCAGGGAGGAGATTTCACCGCCG 264
Query 343 GGAACGGAACAGGCGGTGAGTCGATCTACGGGAGCAAGTTCGAGGACGAGAATTTCGAGA 402
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 265 GGAACGGAACAGGCGGTGAGTCGATCTACGGGACCAAGTTTGAGGACGAGAATTTCGAGA 324
Query 403 GGAAGCACACCGGACCGGGGATCCTGTCGATGGCGAACGCCGGTGCAAACACGAACGGAT 462
|||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 325 GGAAGCACACCGGACCTGGAATACTGTCGATGGCGAACGCCGGTGTAAACACGAACGGAT 384
Query 463 CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGGAAGCACGTGGTGTTTG 522
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 385 CTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGTAAGCACGTGGTGTTTG 444
Query 523 GGCAGGTCGTGGAAGGCTTAGACGTGGTAAAGGCCATCGAGAAGGTTGGATCATCATCTG 582
|||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 445 GGCAAGTCGTGGAAGGGTTAGACGTGGTGAAGGCGATCGAGAAGGTTGGATCGTCATCTG 504
Query 583 GAAAGCCGACGAAGCCTGTGGTTGTTGCCGATTGTGGTCAGCTCTCTTAGGATCTT 638
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 GAAAGCCAACGAAGCCTGTGGTTGTTGCCGATTGTGGCCAGCTCTCTTAGGATCTT 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5