BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38770.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490641 jgi|Araly1|490641|fgenesh2_kg.7__74__AT4G38770.1 2305 0.0
> Ahg490641 jgi|Araly1|490641|fgenesh2_kg.7__74__AT4G38770.1
Length=1707
Score = 2305 bits (1248), Expect = 0.0
Identities = 1579/1724 (92%), Gaps = 81/1724 (5%)
Strand=Plus/Plus
Query 1 CATATCATCACCTTCCCCACTAATACTCTA--TAGT--T-T-G--TTTTTGTTCTTCTTA 52
|||||| |||||||| |||||||||||||| || | | | | |||||||| ||||||
Sbjct 1 CATATCCTCACCTTCTCCACTAATACTCTATTTA-TCATATAGTTTTTTTGTTGTTCTTA 59
Query 53 TAATCTTTATATTTTCAGCAAACGAAAGGGAAGTGTGTCAGAAATCTCAGAGGGTGAGAA 112
||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 60 TAAACTTTATATTTTCAGCAAACGAAAGAGAAGTGTGTCAGAACTCTCAGAGGGTGAGAA 119
Query 113 TCCCAATGAGGATCTTACCCGAACCTCGAGGTTCGGTTCCGTGTCTTCTCCTTCTTGTGT 172
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 120 TCCCAATGAGGATCTTACCCGAACCTCGAGGTTCGATTCCGTGCCTTCTCCTTCTCGTGT 179
Query 173 CGGTTCTCTTATCAGCGACTCTCTCACTCGCTCGTGTCGTCGAAGTTGTCGGTTACGCCG 232
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGTTCTCTTTTCAGCGACTCTCACACTCGCTCGTGTCGTCGAAGTTGTCGGTTACGCCG 239
Query 233 AGAGCAAGATCAAAACCCCCCATGCATTTTCAGGACTTCGAGTGACGATCGACTGTAAGG 292
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 AGAGCAAGATCAAAACCCCCCATGCATTTTCAGGACTCCGAGTGACGATCGACTGTAAGG 299
Query 293 TGAATAAAGGCCATTTTGTTACAAAAGGTTCGGGAAACATTGACGACAAAGGAAAGTTTG 352
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 300 TAAATAAAGGCCATTTTGTTACAAAAGGTTCCGGAAACATTGACGACAAAGGAAAATTTG 359
Query 353 GTCTTAATATTCCTCATGACATTGTCTCCGACAACGGAGCGTTAAAGGAGGAGTGTTACG 412
|||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 360 GTCTTAATATTCCTCATGACATTGTCTCCGACGATGGAGCGTTGAAGGAGGAGTGTTACG 419
Query 413 CTCAGCTTCACAGCGCGGCGGGAACACCTTGTCCGGCTCACGACGGCCTTGAGTCCACCA 472
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 420 CTCAGCTTCACAGCGCGGCGGGAACCCCTTGTCCGGCTCACGACGGCCTTGAATCCACCA 479
Query 473 AGATCGTGTTTTTATCCAAATCCGGGGATAAACACATTTTGGGTCTCAAACAAAATCTGA 532
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 AGATCGTGTTTTTATCCAAATCCGGGGATAAACACGTTTTGGGTCTCAAACAAAATCTGA 539
Query 533 AATTTTCACCGGAGATTTGCGTTTCCAAATTCTTCTGGCCTATGCCTAAGTTGCCTCCTT 592
|||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 540 AATTTTCACCCGAAATTTGCGTTTCGAAATTCTTCTGGCATATGCCTAAGTTGCCTCCTT 599
Query 593 TTAAGGGCTTTGATCATCCTTTCCCTTTACCTCCACCTTTGGAACTTCCACCGTTTCTCA 652
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTAAGGGCTTTGATCATCCGTTCCCTTTACCTCCACCTTTGGAACTTCCACCGTTTCTCA 659
Query 653 AGAAGCCATGTCCACCTAAATACAGTCCTCCTGTGGAGGTTCCACCCCCGGTACCAGTTT 712
||||||||||||||||||||| ||| |||||||||||||||||||| ||||| || ||||
Sbjct 660 AGAAGCCATGTCCACCTAAATTCAGCCCTCCTGTGGAGGTTCCACCTCCGGTTCCGGTTT 719
Query 713 ACGAGCCGCCGCCAAAGAAAGAGATTCCCCCGCCGGTTCCGGTTTACGATCCACCGCCTA 772
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 720 ACGAGCCACCGCCAAAGAAAGAGATTCCGCCTCCGGTTCCGGTTTACGATCCACCGCCAA 779
Query 773 AGAAAGAGGTTCCACCACCTGTCCCAGTTTACAAGCCACCACCAAAGGTGGAGCTTCCAC 832
||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 780 AGAAAGAGGTTCCCCCACCTGTCCCGGTTTACGAGCCACCACCAAAGGTGGAGCTTCCAC 839
Query 833 CGCCTATTCCTAAGAAGCCTTGTCCACCTAAACCGCCGAAGATAGAGCACCCACCTCCGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGCCTATTCCTAAGAAGCCTTGTCCACCTAAACCGCCGAAGATAGAGCACCCACCTCCGG 899
Query 893 TTCCGGTTTACAAGCCACCGCCAAAGATAGAGAAGCCACCTCCGGTTCCGGTTTACAAGC 952
|||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 900 TTCCGGTTTACAAGCCACCGCCAAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGC 959
Query 953 CCCCGCCAAAGATAGAGCACCCACCT-C-------C-C---------GTTCCGGTACACA 994
| |||||||||||||||||||||||| | | | |||||||||||||
Sbjct 960 CACCGCCAAAGATAGAGCACCCACCTTCGATAGAGCACCCACCTCCAGTTCCGGTACACA 1019
Query 995 AGCTACCGAAGAAGCCATGTCCGCCTAAGA-----AAGTTG-A--T-CCACCGCCGGTGC 1045
||| ||||||||||||||||||||||||| ||| || | | |||||||||||||
Sbjct 1020 AGCCACCGAAGAAGCCATGTCCGCCTAAGCCGCCGAAGGTGGAGCTTCCACCGCCGGTGC 1079
Query 1046 CAGTCCACAAACCACCAACGAAGAAGCCTTGTCCGCCTAA---G---AA-A--GTTGATC 1096
||||| |||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 1080 CAGTCTACAAACCACCAACGAAGAAGCCTTGTCCGCCTAAACCGCCGAAGAAAGTTGATC 1139
Query 1097 CACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTCATTCCACCGCCGAAGATAG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTCATTCCACCGCCGAAGATAG 1199
Query 1157 AGCACCCACCTCCAGTTCCGGTTTACAAGCCGCCGCCGAAGATAGAGCATCCACCAATCT 1216
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAAGATAGAGCATCCACCAATCT 1259
Query 1217 ACATACCACCAAT--TG-T---GAAGAAGCCGTGTCCTCCGCCGGTACCAATATACAAAC 1270
||||||||||| | || | |||||||||||||||||||||||||||| |||||||||
Sbjct 1260 ACATACCACCAGTAGTGATCCCGAAGAAGCCGTGTCCTCCGCCGGTACCAGTATACAAAC 1319
Query 1271 CACCGGTTGTGATCCCCAAGAAGCCATGCCCTCCGCCGGTACCAGTATACAAACCACCGG 1330
||||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 1320 CACCGGTGGTGATTCCGAAGAAGCCGTGTCCTCCGCCGGTACCAGTATACAAACCACCGG 1379
Query 1331 TAGTGGTGATTCCAAAGAAGCCATGTCCGCCACTTCCACAGCTCCCACCACTTCCAAAGT 1390
| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1380 C-G-G-TGATACCAAAGAAGCCATGTCCGCCACTTCCACAGCTTCCACCACTTCCAAAGT 1436
Query 1391 TTCCACCTCTTCCTCCTAAATACATTCACCACCCCAAGTTCGGGAAATGGCCTCCGTTGC 1450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTCCACCTCTTCCTCCTAAATACATTCACCACCCCAAGTTCGGGAAATGGCCTCC----- 1491
Query 1451 CTCCACACCCTTGAGAAACATTAAATACGTATATATAGATATACGTATACTCATGTATAA 1510
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1492 ----ACACCCTTGAGAAA-ATTAAATACGTATATATATATATACGTATACTCATGTATAA 1546
Query 1511 TCAACGTgtttgcctttttttaatattttatctttgcatatg-t-tttatatcttgtttc 1568
|||||||||| |||||||| |||| ||||||||||||| | | ||||||| |||||||
Sbjct 1547 TCAACGTGTT-GCCTTTTT--AATACTTTATCTTTGCATGTTCTCTTTATATTTTGTTTC 1603
Query 1569 ttttgttggcttt------gAGTTCTCTT-T--GTGTAGACTGGTTGTTTATATTCCCGC 1619
||||||||||||| ||||| |||| | |||||||||| ||||||||||||||||
Sbjct 1604 TTTTGTTGGCTTTCCCTCTGAGTTATCTTATATGTGTAGACTGTTTGTTTATATTCCCGC 1663
Query 1620 AAT---CTTCCAACAATAATATGGTAATGATACGTTTCTCTTTT 1660
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1664 AATATTCTTCCAACAATAATATGGTAATGATACGTTTCTCTTTT 1707
Score = 110 bits (59), Expect = 5e-23
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1141 CCACCGCCGAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCCGCCGCCGAAGATA 1200
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 914 CCACCGCCAAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCCACCGCCAAAGATA 973
Query 1201 GAGCATCCACC 1211
||||| |||||
Sbjct 974 GAGCACCCACC 984
Score = 106 bits (57), Expect = 6e-22
Identities = 65/69 (94%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 864 ACCGCCGAAGATAGAGCACCCACCTCCGGTTCCGGTTTACAAGCCACCGCCAAAGATAGA 923
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1186 ACCGCCGAAGATAGAGCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAAGATAGA 1245
Query 924 GAAGCCACC 932
| | |||||
Sbjct 1246 GCATCCACC 1254
Score = 95.3 bits (51), Expect = 1e-18
Identities = 221/298 (74%), Gaps = 31/298 (10%)
Strand=Plus/Plus
Query 1015 CCGCCTAAGAAAGTTGATCCACCGCCGGTGCCAGTCCACAAACCACCAACGAAGA-AG-C 1072
||||| ||||||||||||||||||||||| ||||||||||| || || | |||| || |
Sbjct 1121 CCGCCGAAGAAAGTTGATCCACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTC 1180
Query 1073 CTT-GTCCGCCTAAGAAAGTTG-ATCCACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAA 1130
|| ||||| |||| || | | ||||| |||||||| || ||||||||||||| ||
Sbjct 1181 ATTCCACCGCCGAAGATAG-AGCACCCACCTCCGGTTCCGGTTTACAAGCCGCCGCCGAA 1239
Query 1131 GATAG-TCATTCCACCGCCGAAGATAGAGCACCCACCTCCAGT--TCCGGTTTACAAGCC 1187
||||| || |||| || || || | | ||||| ||| ||| | | |||||
Sbjct 1240 GATAGAGCA-TCCA---CC-AATCTACA-TA-CCACCAGTAGTGATCCCG--AAGAAGCC 1290
Query 1188 GCCG-CCGAAGATAGAGCATCCACCAATCTACATACCACCAAT--TG--T--GAAGAAGC 1240
| | || | | | | |||| | |||| |||||| | || | ||||||||
Sbjct 1291 G-TGTCCTCCG-CCG-G--T--ACCAGTATACAAACCACCGGTGGTGATTCCGAAGAAGC 1343
Query 1241 CGTGTCCTCCGCCGGTACCAATATACAAACCACCGGTTGTGATCCCCAAGAAGCCATG 1298
|||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||
Sbjct 1344 CGTGTCCTCCGCCGGTACCAGTATACAAACCACCGGCGGTGATACCAAAGAAGCCATG 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5