BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38790.1 Length=1116 Score E Sequences producing significant alignments: (Bits) Value Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1 1574 0.0 Ahg932042 jgi|Araly1|932042|scaffold_400030.1 869 0.0 > Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1 Length=1033 Score = 1574 bits (852), Expect = 0.0 Identities = 959/1009 (95%), Gaps = 14/1009 (1%) Strand=Plus/Plus Query 1 ACCTTTTTCACTTTTGCCGagaaaatcagagac---------agaagaagaagaaaagcg 51 ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ACCTTTTTCACTTTTGCCGAGAAAATCAGAGACAGAAGAAGAAGAAGAAGAAGAAAAGCG 60 Query 52 aaaaaaa-GCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGTGGTGTGGTCATGG 110 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 AAAAAAAGGCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGCGGTGTGGTCATGG 120 Query 111 GTTAGGAGACAACCTCCGAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 170 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTAAGGAGACAACCTCCAAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 180 Query 171 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 240 Query 231 GTTCATTCCATCGGGATCTGTGTGCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 290 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GTTCATTCCATCGGGATCTGTGTTCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 300 Query 291 GGATTGTCACTGAAATCTCAGGAGCTTACGGCGATATTTTTAGCTGTTAGGCTGTATTGT 350 ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| Sbjct 301 GGATTGTCACTGAAATCCCAGGAGCTTACGGCGATATTTCTAGCTGTCAGGCTGTATTGT 360 Query 351 AGCATTGTAATGGAATATGATATACATACCATTCTTGACTTGGCTACTTTGGGAACAACT 410 ||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 361 AGCTTTGTAATGGAATATGATATACATACTATTCTGGACTTGGCTACTTTGGGAACAACT 420 Query 411 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 480 Query 471 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGCATTAGCTGTGTTCATCCATCCA 530 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGTTTTAGCTGTGTTCATCCATCCA 540 Query 531 TCGACCTCTCATAACATAATAAACAGAATTTCATGGGCTTTATGTGTATACCTTGAAGCT 590 || ||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||| Sbjct 541 TCCACCTCTCATCACATATTAAACAGGATTTCATGGGCATTATGTGTATACCTTGAAGCT 600 Query 591 GTTTCAGTACTACCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 650 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTTTCTGTTCTGCCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 660 Query 651 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 720 Query 711 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCA 770 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTTTGGCCATCA 780 Query 771 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 840 Query 831 GTCAAAAGCGTTTTCGGAGGCCAGCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTT 890 ||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 841 GTCCAAAGCGTTTTCGGAGGGCAGCTTGTTCTCCGGCTTCCGTCTGGAGTAGTTTAAGTT 900 Query 891 CAAAAGATAGAAATACCCCAACGATGTCCTGCGATGAGCTTGACGGAAATTCTAATTGGG 950 ||||||||||||||| | || ||||||| | | ||||||| |||||||||| || || Sbjct 901 AAAAAGATAGAAATACTCAAATGATGTCC-G--ACGAGCTTGCCGGAAATTCTTATCGG- 956 Query 951 AAAGATAGCTCAATTTTTCTTTACCTCTGATTTCATCGTTTATGTGTCT 999 ||||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 957 AAAGACAGCTCAGTTTTTCTTTACCTCTGATTTCACCGTTTATGTGTCT 1005 > Ahg932042 jgi|Araly1|932042|scaffold_400030.1 Length=853 Score = 869 bits (470), Expect = 0.0 Identities = 709/825 (86%), Gaps = 14/825 (2%) Strand=Plus/Plus Query 80 GAAGACTCCGATCCACGTGGTGTGGTCATGGGTTAGGAGACAACCTCCGAAGGTGAAGGC 139 ||||||||||||||||| ||| | | ||||||| || || || || || |||||||| || Sbjct 26 GAAGACTCCGATCCACGCGGTTTCGACATGGGTGAGAAGGCAGCCACCAAAGGTGAAAGC 85 Query 140 TTTTCTCGCCGTGGTCA-CTGGCATGGCGGC-TTTGGTTCTTCTCAGATTCATTGTTCAC 197 ||| || ||||| || | |||| |||||||| || ||||||||||||||||| |||||| Sbjct 86 TTTCCTTGCCGTCGT-ATCTGGTATGGCGGCGCTT-GTTCTTCTCAGATTCATCGTTCAC 143 Query 198 GATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTGCTC 257 |||||||||||||||||||||||||| || ||||||||||| || || |||| ||| || Sbjct 144 GATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTT 203 Query 258 ATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCTCAGGAGCTT 317 ||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| Sbjct 204 ATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTT 263 Query 318 ACGGCGATATTTTTAGCTGTTAGGCTGTATTGTAGCATTGTAATGGAATATGATATACAT 377 ||||| |||||| ||||||| ||||| ||||| || |||||||||||||||| |||||| Sbjct 264 ACGGCAATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGACATACAT 323 Query 378 ACCATTCTTGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTC 437 |||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||| Sbjct 324 ACCATTCTGGACTTGGCTACTTTGGGAACAACACTCTGGGTTATATATATGATCCGTTTT 383 Query 438 AAG-TTAAGAGCTAGTTACATGGAGGACAAAGACAACTTTCCTCTCTATTATGTGCTTGC 496 ||| | || ||||| |||||||||||| |||||||||||| |||||||||||||||| | Sbjct 384 AAGCTCAA-AGCTACTTACATGGAGGAAAAAGACAACTTTGCTCTCTATTATGTGCTCGT 442 Query 497 GCCCTGTGT--TGCATTAGCTGTGTTCATCCATCCATCGACCTCTCATAACATAATAAAC 554 ||||||||| ||| ||||||| || || |||||||| || || || || ||| | || Sbjct 443 GCCCTGTGTCGTGC--TAGCTGTATTGATTCATCCATCAACGTCACACAATATATTGAAT 500 Query 555 AGAATTTCATGGGCTTTATGTGTATACCTTGAAGCTGTTTCAGTACTACCTCAGCT-ACG 613 ||||| || |||| || ||||| ||||| ||||||||||||||||| || ||||| | | Sbjct 501 AGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGCTGA-G 559 Query 614 AGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGG 673 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 560 AGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGG 619 Query 674 AGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTGTGGACACGCGGGGACG 733 ||||||||| || | |||||||| ||||||||||||||| || ||||||| || ||||| Sbjct 620 AGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGATTATGGACACCCGCGGACG 679 Query 734 GTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCAATGGTTCTGATCTCAGAAATTGT 793 ||||||||| ||||||||||| | |||||||| |||||| | ||||||||||| || Sbjct 680 CCTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATCGT 739 Query 794 TCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCAAAAGCGTTTTCGGAGGCCA 853 ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 740 CCAAACATTCATCTTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCCA 799 Query 854 GCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTTCA-AAAGA 897 ||||||||| |||| || ||||| || || |||||| | ||||| Sbjct 800 GCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTT-ATAAAGA 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41592102447 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5