BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38800.1 Length=1135 Score E Sequences producing significant alignments: (Bits) Value Ahg490644 jgi|Araly1|490644|fgenesh2_kg.7__77__AT4G38800.1 1495 0.0 Ahg951304 jgi|Araly1|951304|scaffold_803191.1 67.6 2e-10 > Ahg490644 jgi|Araly1|490644|fgenesh2_kg.7__77__AT4G38800.1 Length=940 Score = 1495 bits (809), Expect = 0.0 Identities = 905/950 (95%), Gaps = 11/950 (1%) Strand=Plus/Plus Query 12 AAAAGGTCCAAAAACGAATAAACTGTATCTCTCATTCGCCGGAGTTTCCAGCCGTTTCTT 71 ||| ||||||||||||||| ||| || || |||||||||||||||||||||||||||| Sbjct 1 AAAGGGTCCAAAAACGAAT-AAC--TA--TCGCATTCGCCGGAGTTTCCAGCCGTTTCTT 55 Query 72 TCCGATTCTCGGATTTTTCCTGGGAATCAAACGCATCGCCGAGAATCGGAAGAGAGGGAT 131 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 56 CCCGATTCTCGGATTTTTCTTGGGAATCAAACGCGTCGCCGAGAATCGGAAGAGAGGGAA 115 Query 132 AAGGTTATGGCTCCTCATGGAGATGGATTAAGTGACATCGAAG-AACCTGAGGTCGATGC 190 |||| ||||||||||||||||||||||||||||||||||| || ||||||| | | ||| Sbjct 116 AAGGGTATGGCTCCTCATGGAGATGGATTAAGTGACATCG-AGAAACCTGA-G-C-TTGC 171 Query 191 TCAATCGGAGATTCTTCGACCGATCTCCTCAGTCGTCTTCGTCATCGCTATGCAAGCGGA 250 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 172 TCAATCGGAGATTCTTCGTCCGATCTCCACAGTCGTCTTCGTCATCGCTATGCAAGCGGA 231 Query 251 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 291 Query 311 AGGATTGCCCTGGGTTCTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 370 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AGGACTGCCCTGGGTTTTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 351 Query 371 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCAGCTTCTCTCAT 430 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 352 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCTGCTTCTCTCAT 411 Query 431 AACTTTTGCTTCCATCCAAGCATTAAAACCTGACATCATAATCAATGCCGGAACCTGCGG 490 |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 412 AACTTTTGCTTCTATCCAAGCATTAAAACCTGACATTATAATCAATGCTGGAACCTGCGG 471 Query 491 TGGCTTCAAGGTCAAAGGAGCCAACATAGGCGATGTATTCCTTGTATCTGATGTTGTGTT 550 |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 472 TGGCTTTAAGGTTAAAGGAGCCAACATAGGCGACGTATTCCTTGTATCTGATGTTGTGTT 531 Query 551 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTCCGTCAGGC 610 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 532 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTTCGTCAGGC 591 Query 611 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 651 Query 671 TGACTCGTTGGATATGTCCACGCAAGATGAAACATTGATCATTGCCAATGATGCTACGCT 730 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 652 TGACTCGTTGGATATGTCCACGCAAGATGAATCATTGATCATTGCCAATGATGCTACACT 711 Query 731 AAAGGACATGGAGGGTGCTGCCGTGGCGTATGTGGCTGATCTTCTGAAAATACCAGTCGT 790 ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 712 AAAAGACATGGAGGGTGCTGCTGTGGCGTACGTGGCTGATCTTCTGAAAATACCAGTCGT 771 Query 791 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACAGCAGAAGAGTTCTT 850 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 772 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACTGCAGAAGAGTTCTT 831 Query 851 GCAGAACTTGACAGTTGTGACCGCTGCATTAGAGGGAACTGCTACTAAAGTGATCAACTT 910 |||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||| Sbjct 832 GCAGAACTTGACAGTTGTTACCGCTGCACTAGAGGAAACTGCCACTAAAGTGATCAACTT 891 Query 911 CATCAATGGGAGAAACCTTTCGGACCTTTAACTTCTGTTCTCTTCCTTTT 960 | ||||||||| ||||||||| |||||||||||| |||||||||| |||| Sbjct 892 CGTCAATGGGAAAAACCTTTCAGACCTTTAACTTTTGTTCTCTTC-TTTT 940 > Ahg951304 jgi|Araly1|951304|scaffold_803191.1 Length=304 Score = 67.6 bits (36), Expect = 2e-10 Identities = 53/60 (88%), Gaps = 5/60 (8%) Strand=Plus/Plus Query 164 TGACATCGAAG-AACCTGAGGTCGATGCTCAATCGGAGATTCTTCGACCGATCTCCTCAG 222 |||||||| || |||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 23 TGACATCG-AGAAACCTGAGGT---TGTTCAATCGGAGATTCTTCGACCGATCTCCACAG 78 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42316437870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5