BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38810.2 Length=1669 Score E Sequences producing significant alignments: (Bits) Value Ahg490646 jgi|Araly1|490646|fgenesh2_kg.7__79__AT4G38810.2 2113 0.0 > Ahg490646 jgi|Araly1|490646|fgenesh2_kg.7__79__AT4G38810.2 Length=1583 Score = 2113 bits (1144), Expect = 0.0 Identities = 1445/1577 (92%), Gaps = 74/1577 (5%) Strand=Plus/Plus Query 98 TTTTGGGTGTGTCAAGTTTCTGTTCTTCCTTTTCTCGTGCTTCCATCACGAGATATCTCA 157 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 73 TTTGGGGTGTGTCAAGTTTCTGTTTTTCCTTTTCTCGTGCTTCCATCACGAGATCTCTCA 132 Query 158 CAAGGCTCTCGCGACTCAAGAAAGGTAAAGATAAAGAAAGAAGAAGCAAAGATTCCATAA 217 |||||||| ||||||||||||||| ||||| |||||| | ||| |||||||||||| Sbjct 133 CAAGGCTCCCGCGACTCAAGAAAGATAAAG----AGAAAG-A-AAG--AAGATTCCATAA 184 Query 218 ATGGACTTGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 277 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 ATGGACATGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 244 Query 278 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 304 Query 338 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 364 Query 398 ATCGGCGCTGCTCTTGGTTTGCCTGCTCAAGGAACTTCTCCTGATTCCGATCACATCTAC 457 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 365 ATCGGCGCCGCTCTTGGTTTGCCTGCTCAAGGCACTTCTCCTGATTCTGATCACATCTAC 424 Query 458 TCCGAGGTCCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTC 517 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TCCGAGGTTCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTT 484 Query 518 AAAGAAGTGTTGTCGGACATTTTGTTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 577 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 485 AAAGAAGTGTTGTCGGACATTTTGCTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 544 Query 578 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATATGAA 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 545 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATACGAA 604 Query 638 ATCGAGAGC--ATTTCTGTTTTCTCAGAGCTCTCCAGTAGCAAGGACGCATCGCTCCGTG 695 ||||| | | ||||||| |||||||||||||||||| || |||||||||||||||||| Sbjct 605 ATCGA-A-CTTGTTTCTGTCTTCTCAGAGCTCTCCAGTTGCGAGGACGCATCGCTCCGTG 662 Query 696 ATTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACG 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 ATTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACG 722 Query 756 ACCCATGGGTGATGAGCAACATCGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAG 815 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 723 ACCCATGGGTGATGAGCAACATTGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAG 782 Query 816 ATAAAAGAGAGAAAAGCGCGTCTCAGGAGAGATTCTTGGAAGCATTCAAGAGAGTCGTGG 875 |||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 783 ATAAGAGAGAGAAGAGCGCGTCTCAGGAGAAATTCTTGGAGGCATTCAAGAGAGTCGTGG 842 Query 876 AGAGTGTGGCTCAGCGTCTCAATGAACAGCCCGTGATCGTTGCTCACAGCGAAAACACCT 935 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 843 AGAGAGTGGCTCAGCGTCTCAATGAACAACCCGTGATCGTTGCTCACAGCGAAAATA-CT 901 Query 936 TT-GATGGGAGCGGTATCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTA 994 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TTCGATGGGAGCGGTGTCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTA 961 Query 995 AACGTTGCCA-TGGAGACGATTCCAAAAGACCGTCAGGGTAAGGTGTCTAAAGGATATCT 1053 ||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 962 AACGTTG-CATTGGAGACGATTCCAAAAGACCGTCATGGTAAGGTGTCTAAAGAATATCT 1020 Query 1054 ACGAGCTGTGCTTGACACTGTTGCACCATCGGCCACTTTACCACCAATAGGCGCTGTGTC 1113 |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 1021 ACGAGCTGTGCTTGACACTGTTGCACCATCTGCGACTTTACCACCGATAGGCGCTGTGTC 1080 Query 1114 CCAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATGT 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1081 CCAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATAT 1140 Query 1174 GGTGAAGGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCA 1233 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGTGAATGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCA 1200 Query 1234 GCTCGAGGGTAGTCCCATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTC 1293 ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GCTTGAGGGTAATCCGATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTC 1260 Query 1294 GGCTACCTTTCTGCCGTCAACTTCGACTGATACAGAGGAGCCTTCAAACTAATCATAGAA 1353 |||||| ||||||| | | |||| || ||| |||||||||||||||| |||||||| | Sbjct 1261 GGCTACATTTCTGCAGCCGACTTTGAATGAAACAGAGGAGCCTTCAACCTAATCAT---A 1317 Query 1354 GGGAATAAGCAGCACTAGCAGCAACAAATGTTATATGGTTTTGACTTTTGAG-TGTTTAC 1412 | | | | | | |||||||||||| ||| | ||| | ||||| Sbjct 1318 --G----A-C-G-----G--G-----AATGTTATATGG-TTT--C---AGAGTTTTTTAC 1351 Query 1413 CCCCAAAAGTTTTAGATTAATGAGGAAAACCGTCTTTACTTT-CAGATGTATAAAATTGA 1471 |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct 1352 CCCCAAAAGTTTTAGAGTAATGAGGAAAACCGTC-TTACTTTGCAGATGTATAATATTGA 1410 Query 1472 AAGTTTGGGGTTTCCTCTTGTTGGTGTGGTGATTCTACTCATGCCttttt-ttttttttt 1530 ||||||||||||||||||||| |||||||||||| |||||| | |||||| |||| |||| Sbjct 1411 AAGTTTGGGGTTTCCTCTTGTGGGTGTGGTGATTATACTCACG-CTTTTTCTTTTCTTTT 1469 Query 1531 tCTAATGACCATGGGATGCAATGTTTACTCTGTTTTTTAATTTCGTTA-AAATTTGTTTA 1589 |||||| |||| ||||||||||||||||| || ||||| ||||||||| ||| || Sbjct 1470 TCTAATTACCAAGGGATGCAATGTTTACTGTG-TTTTT-ATTTCGTTATAAA-----TT- 1521 Query 1590 CGTTTATGATGCTTGAATGGCTATGATGAAACATTTGAGTTATCTTTAAAAGTGTGAAAT 1649 | || | | | | | | | ||||||||||||||||||||||||||||| ||||| Sbjct 1522 -G-TT-T-A--C--G--T---T-T-ATGAAACATTTGAGTTATCTTTAAAAGTGGGAAAT 1566 Query 1650 AAATATTCTGAAGTTAA 1666 ||| ||| ||||||||| Sbjct 1567 AAAAATTGTGAAGTTAA 1583 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62582272535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5