BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38890.1
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490654 jgi|Araly1|490654|fgenesh2_kg.7__87__AT4G38890.1 3480 0.0
> Ahg490654 jgi|Araly1|490654|fgenesh2_kg.7__87__AT4G38890.1
Length=2190
Score = 3480 bits (1884), Expect = 0.0
Identities = 2093/2194 (95%), Gaps = 13/2194 (1%)
Strand=Plus/Plus
Query 107 ATGTCAGATGTAATAGCGGAGCACGCGGTGGATACTAGTGTTGAAGGAGATGCAAAGGCT 166
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGTCCGATGTAATAGCGGAGCTCGCGGCAGATACTAGTGTTGAAGGAGATGCAAAGCCT 60
Query 167 GCGTT-ACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGGAAGAGCT 225
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GC-TTCACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGCAAGAGCT 119
Query 226 TATAGAACGATCAATGGCTCCTATTAAGAAGGAGTTCCTTTGTCCTCCTCCTCCAAGCCG 285
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 120 TATAGAACGATCAATGGCTCCTATCAAGAAGGAGTTCCTATGTCCTCCTCCTCCAAGCCG 179
Query 286 TTCCGTGAAGCAAAATGATGCCGCCGATGTTAGGGCGCCTCAATCGGGTTTGGTTCAGGA 345
||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TTCCGGGAAGCAAAATGACGCCGCCGATGTTAGGGCGCCTCAATCGGGCTTGGTTCAGGA 239
Query 346 GAAGAAATCTAAACGACAACTGAAACGGGAACGCCGCGAGCAATCTACGATCAATCTCTG 405
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 240 GAAGAAATCTAAACGACAACTCAAACGGGAACGCCGCGAGCAATCTACCATCAATCTCTG 299
Query 406 TCCGCAGGTTGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 465
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCGCAGGTGGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTT 359
Query 466 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAGGCAGATGATATAGAGGGGCAATGCCC 525
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 TAATCATGATATTGAGGCTTTCAAGGCTCAGAAACCAGATGATATAGAGGGGCAATGCCC 419
Query 526 ATTTGTGGCCTCTGGAATGAAGTGTGCATATGGTTTATCATGTAGATTCTTAGGCAGTCA 585
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 420 ATTTGTGGCCTCTGAAATGAAGTGTGCATATGGTTTATCATGTAGATTCCTAGGCACTCA 479
Query 586 CAGAGATATTACTGGTAATTCAGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 645
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGAGATATTGCTGGTAATTCTGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAA 539
Query 646 AGAGACACAGAGGCTTCTGTGGAAAAATAAGATGACTTTTACAAACGCAGATGCGAAACT 705
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 540 AGAGACCCAGAGGCTTCTCTGGAAAAATAAGATGACTTTTACCAACGCAGATGCAAAACT 599
Query 706 TAAGTCCCTCGGTCTGTTGGGACATGCCaaaaaaaGCAATGCTGCCGAGGAAATTACCGC 765
|||||||||||||||||||| ||||||||||||||||| |||||||| |||| || | |
Sbjct 600 CAAGTCCCTCGGTCTGTTGGGGCATGCCAAAAAAAGCAACGCTGCCGAAGAAAATAGCAC 659
Query 766 AGAAAAAACTCAAAATGGTATGAACGGCACTCAAGCAACTGAAGTAGCGGTTGACTCAGC 825
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 660 AGAAAAAACTCAAAATGGTGTGAACGGCACTCAAGCAACTGATGCAGCGGTTGACTCAGC 719
Query 826 TGTCAGTTCTGAGCATACATCAGAAATGATACAAGATGTTGATATTCCTGGACCATTAGA 885
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 720 TGTCAGTTCTGAGCCTACATCCGAAATGATACAAGATGCTGATATTCCTGGACCATTAAA 779
Query 886 AACTGAGGAAGTTCGTCCCATGAAAAAGGCAAAATCTGAGGACCAAA-AGAATTCTAAAA 944
|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 780 AACTGAGGAAGTTCGTCCCATGAAAAAGGCTAAATCTGAGGA-CAAAGAGAATTCTAAAC 838
Query 945 CTGGAGATGTTGGTGGAGTTTATGATGGCGTGAAATTGGAAGAGGAAACGAAAAAGAATG 1004
|||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 839 CTGGAGATGTTGGTGGAGTTAATGATGGCGTGAAAGTGGAAGAGGATGCGAAAAAGAATG 898
Query 1005 GGTATCCTACTTCAAAAGCTAACGTAGAAGATGAGGATAGCATCAAAATTGTTGAAACTG 1064
||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 899 GGTATTCTATTTCAAAAGCTGACGTAGAAGATGAGGATAGTATCAAAATTGTTGAAACTG 958
Query 1065 ATAGTAGTCTAAAGTTGCACCCTCGAGAAAAGAAAAAGCTAATTGATTTTAGGGATAAGT 1124
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 959 ATAGTAGTTTAAAGTTGCACCCTCGTGAAAAGAAAAAGTTAATTGATTTTAGGGATAAGT 1018
Query 1125 TGTACCTTGCACCCTTAACAACCGTGGGCAATCTTCCCTTCCGAAGACTTTGTAAAGTGT 1184
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1019 TGTACCTTGCACCCCTAACAACTGTGGGCAATCTACCCTTCCGAAGACTTTGTAAAGTGT 1078
Query 1185 TGGGAGCAGATGTGACTTGTGGTGAGATGGCTATGTGCACAAATCTTTTGCAGGGCCAAG 1244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 TGGGAGCAGATGTGACTTGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGCCAAG 1138
Query 1245 CTTCTGAATGGGCTCTGCTTAGACGACATTCATCGGAAGATCTGTTTGGTGTTCAGATTT 1304
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1139 CTTCAGAATGGGCTCTGCTTAGACGGCATTCTTCGGAAGATCTGTTTGGTGTTCAGATTT 1198
Query 1305 GCGGTTCTTATCCTGACACGGTGTCGCGCGTAGTTGAACTTATAGACCGAGAATGCACTG 1364
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1199 GCGGTTCTTATCCTGACACGGTGTCGCGCACAGTTGAACTTATAGACCGAGAGTGCACCG 1258
Query 1365 TTGATTTCATAGATATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGATTTCATAGACATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTG 1318
Query 1425 GTTCAGCTCTTCTCAACAAACCATTACGGATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1484
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1319 GTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAAGTCTCTTCTTCCA 1378
Query 1485 TTGTTGAAACACCTATCACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTGTTGAAACACCTATTACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGA 1438
Query 1545 TAGATTCTTTAATTGCAGATATCGGAAACTGGGGAGCCACTGCAGTGACTATTCATGGGC 1604
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1439 TAGATTCATTAATTGCAGATATCGGAAATTGGGGAGCCACTGCAGTGACTATTCATGGGC 1498
Query 1605 GGTCAAGACAGCAACGTTATAGCAAGTCTGCAGATTGGGACTATATATACCAGTGTACCA 1664
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1499 GATCAAGACAGCAACGTTATAGCAAGTCTGCGGATTGGGACTATATATACCAGTGTACCA 1558
Query 1665 AAAACGCTACTACTAACCTACAGGTTATAGGAAATGGAGATGTGTACTCATATTTAGACT 1724
|||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1559 AAAACGCTTCTACTAACCTACAAGTTATAGGAAATGGAGATGTTTACTCTTATTTAGACT 1618
Query 1725 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCAC 1678
Query 1785 TGATCAAGCCTTGGATCTTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCTG 1844
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 TGATCAAGCCTTGGGTATTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCCG 1738
Query 1845 GAGAAAGACTTAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1904
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GAGAAAGACTCAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCG 1798
Query 1905 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACATTTA 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1799 ACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACGTTTA 1858
Query 1965 GGTACATACCTGTCGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTT 2024
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1859 GGTACATACCTGTTGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCACCTT 1918
Query 2025 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGG 1978
Query 2085 TGCGGATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACATTTGCCCCCAAGC 2144
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1979 TGCGTATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACGTTTGCCCCCAAGC 2038
Query 2145 ACAAATCCAACGCATATGACAGAGCTGAAAACGGCTGATTCAACCACATTTTCTGTAATA 2204
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 2039 ACAAATCCAACGCATATGACCGAGCTGAAAACGGCTGATTCAACCACATCTTCTGTAATA 2098
Query 2205 TCAAATCTCATTTTAAAACATGTCTGAAACGTCATTCTGTAATATTTTTT-------GAC 2257
|||| ||||||| |||||||||||||||| ||||||||||||||||||| |||
Sbjct 2099 TCAATTCTCATTC-AAAACATGTCTGAAACATCATTCTGTAATATTTTTTTATTTTTGAC 2157
Query 2258 TGATTAAATAAAAGACAATGCGATGATTTCTTTG 2291
|||||||||||| |||||||||||||||||||||
Sbjct 2158 TGATTAAATAAA-GACAATGCGATGATTTCTTTG 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86274404925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5