BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38960.3 Length=1445 Score E Sequences producing significant alignments: (Bits) Value Ahg943862 jgi|Araly1|943862|scaffold_700091.1 784 0.0 Ahg932059 jgi|Araly1|932059|scaffold_400047.1 294 1e-78 > Ahg943862 jgi|Araly1|943862|scaffold_700091.1 Length=595 Score = 784 bits (424), Expect = 0.0 Identities = 460/478 (96%), Gaps = 0/478 (0%) Strand=Plus/Plus Query 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 115 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTTCGTGTTGGTTTAGCCGAACCAAG 174 Query 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 175 CAATGCCCCGTGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTATTGTGAGATAGA 234 Query 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 235 CGGTAGCTCTCTTTGTCTGCAATGTGACATGGTCGTACATGTTGGTGGCAAGAGAACACA 294 Query 890 CGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAAAGAAAA 949 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 295 TGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGTGATAAGCCTAAAGCAAA 354 Query 950 CAATACGAGGGACAATTTGCAGAACCAAAGAGTCTCTACAAATGGAAATGGTGAAGCCAA 1009 ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 355 CAATATGAGGGACAATTTGCAGAACCAAAGAGTGTCTACAAACGGAAATGGTGAAGCTAA 414 Query 1010 TGGGAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 1069 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 TGGCAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 474 Query 1070 ATCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGCCTGCAGGCCT 1129 | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 475 AGCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGGCTCCAGGCAT 534 Query 1130 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTgagagagagaga 1187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTGAGAGAGAGAGA 592 Score = 187 bits (101), Expect = 2e-46 Identities = 111/116 (96%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 467 CTTATAAGATTGAAAAAGCAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 526 ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTTTAAGATTGAAGAAGAAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 60 Query 527 AATCATCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCCCCTGCGATGAAAAAG 582 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 AATCGTCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCTCCTGCGATGAAAAAG 116 > Ahg932059 jgi|Araly1|932059|scaffold_400047.1 Length=551 Score = 294 bits (159), Expect = 1e-78 Identities = 210/235 (89%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769 |||||| | |||||||||||| |||||||||||| | ||||| || |||||||| || || Sbjct 113 AGTTCACAAGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAG 172 Query 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829 ||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 173 TAATGCGCCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGA 232 Query 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889 |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 233 TGGTAGTTCCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACA 292 Query 890 CG-GTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAA 943 | | |||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 293 CAAG-CGGTTTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAA 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54050057655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5