BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38970.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1 2350 0.0
Ahg932060 jgi|Araly1|932060|scaffold_400048.1 1110 0.0
> Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1
Length=1500
Score = 2350 bits (1272), Expect = 0.0
Identities = 1420/1488 (95%), Gaps = 24/1488 (2%)
Strand=Plus/Plus
Query 1 AAAAGAGGGAGGAGTGAGAGATAAGGGTGGTGTCATAAGCGTTTACTGTGAGTCTCTCAA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAGAGGGAGGAGTGAGAGATAAGGGTGGTGTCATAAGCTTTTACTGTGAGTCTCTCAA 60
Query 61 AGAAACCAAAGGCAGAGAAAAGAGATAACACACACaaaaaaaaaTGGCATCAACCTCACT 120
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 AGAAACCAAAGGCAGAGAAAAGAGATAACACAAAAAAAAAAAAATGGCATCAACCTCACT 120
Query 121 CCTCAAGGCTTCTCCGGTGTTGGACAAATCCGAATGGGTCAAGGGACAAAGCGTTCTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCAAGGCTTCTCCGGTGTTGGACAAATCCGAATGGGTCAAGGGACAAAGCGTTCTCTT 180
Query 181 CCGTCAGCCTTCTTCCGCTTCTGTCGTCCTCCGCAACCGTGCCACCTCCCTCACCGTCCG 240
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGTCAGCCTTCTTCCGCCTCCGTCGTCCTCCGCAACCGTGCCACCTCCCTCACCGTCCG 240
Query 241 TGCCGCTTCCTCCTACGCCGATGAGCTTGTTAAGACAGCGAAAACTATTGCGTCTCCCGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TGCCGCTTCCTCCTACGCCGATGAGCTTGTTAAGACAGCGAAAACTATTGCGTCTCCGGG 300
Query 301 ACGTGGAATCTTGGCGATGGACGAGTCAAACGCGACTTGCGGGAAACGTTTGGATTCGAT 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 ACGTGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAACGTTTGGATTCGAT 360
Query 361 AGGGCTAGAGAACACTGAGGCAAATCGTCAAGCTTTCCGGACTTTGCTGGTCTCTGCACC 420
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 361 AGGGCTAGAGAACACTGAGGCAAACCGTCAAGCTTTCCGGACTTTGTTGGTCTCTGCACC 420
Query 421 GGGACTCGGACAGTACGTCTCCGGCGCAATTCTATTTGAGGAGACTCTGTACCAGTCTAC 480
||||| || |||||| ||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 421 TGGACTGGGGCAGTACATCTCCGGCGCAATCCTATTTGAGGAGACTTTGTATCAGTCTAC 480
Query 481 CACCGAAGGCAAGAAAATGGTCGACGTCCTCGTCGAGCAGAACATTGTCCCTGGTATCAA 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACCGAAGGGAAGAAAATGGTCGACGTCCTCGTCGAGCAGAACATTGTCCCTGGTATCAA 540
Query 541 AGTCGACAAGGGTTTGGTGCCACTTGTTGGATCCAACAATGAGTCATGGTGCCAAGGACT 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTTGACAAGGGTTTGGTGCCACTTGTTGGATCCAACAATGAGTCATGGTGCCAAGGACT 600
Query 601 AGATGGTCTATCATCTCGAACTGCTGCTTACTATCAACAGGGTGCGCGTTTCGCCAAATG 660
|| |||||| | ||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 601 TGACGGTCTAGCCTCTAGAACTGCTGCTTACTACCAACAGGGTGCGCGTTTTGCCAAATG 660
Query 661 GCGTACTGTCGTGAGCATTCCTAACGGTCCGTCTGCCCTCGCCGTCAAAGAAGCTGCTTG 720
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 661 GCGTACTGTCGTGAGCATTCCTAACGGTCCTTCTGCTCTCGCCGTCAAAGAAGCTGCTTG 720
Query 721 GGGTCTTGCTCGATACGCTGCCATTTCACAGGACAGCGGTTTGGTTCCGATTGTTGAGCC 780
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 721 GGGTCTTGCTCGATACGCTGCCATTTCACAGGACAGCGGGTTGGTTCCGATTGTGGAGCC 780
Query 781 AGAGATCTTGTTGGATGGAGAACACGACATTGACAGAACATACGACGTAGCAGAGAAGGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAGATCTTGTTGGATGGAGAACACGACATTGACAGAACATACGACGTAGCAGAGAAGGT 840
Query 841 TTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGAAGGTATCCTCCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 TTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGAAGGTATTCTCCT 900
Query 901 AAAACCGAGCATGGTGACTCCCGGAGCTGAGTCTAAAGACAGAGCTACTCCTGAACAAGT 960
|||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 901 AAAACCAAGTATGGTGACTCCCGGAGCTGAGTCTAAAGACAGAGTTACTCCTGAAAAAGT 960
Query 961 TGCCGCCTACACCCTCAAGCTCCTCCGCAACAGAGTCCCTCCCGCAGTCCCCGGAATCAT 1020
|||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 961 TGCCGCCTACACCCTCAAGCTCCTCCGCAACAGAGTCCCTCCCGCA-T--------TC-T 1010
Query 1021 GTTTTTGTCCGGAGGACAGTCGGAGGTGGAGGCAACACTCAACTTGAACGCAATGAACCA 1080
| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 -T----GTCCGGAGGACAGTCAGAGGTGGAGGCAACACTCAACCTGAACGCAATGAACCA 1065
Query 1081 GGCACCAAACCCATGGCACGTGTCCTTCTCCTACGCACGTGCGTTGCAGAACACTTGTCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGCACCAAACCCATGGCACGTGTCCTTCTCCTACGCACGTGCGTTGCAGAACACTTGTCT 1125
Query 1141 GAAAACATGGGGCGGCAGACCCGAGAACGTGAACGCAGCTCAGACCACTCTCTTGGCCCG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GAAAACATGGGGCGGCAGACCCGAGAACGTGAACGCAGCTCAGACCACTCTCTTGGCCCG 1185
Query 1201 TGCCAAGGCCAATTCGTTGGCTCAGCTCGGAAAATACACCGGTGAGGGTGAGTCCGAAGA 1260
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1186 TGCCAAGGCCAATTCGTTGGCTCAGCTCGGAAAATACACTGGAGAGGGTGAGTCCGAAGA 1245
Query 1261 GGCTAAGGAGGGCATGTTCGTCAAAGGGTACACCTATTGAAGAGATGATGCTGTGAAAAA 1320
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1246 GGCTAAGGAGGGCATGTTCGTCAAAGGCTACACCTATTGAAGAGATGATGCTGTGAAAAA 1305
Query 1321 AGAGATGAA-GCAGATGTTTTAATCACATTTGTTTTTGAGTTTGCTTGTTATTAATCATG 1379
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1306 AGAGA-GAAAGCAGATGTTTTAATTACATTTGTTTTTGAGTTTGCTTGTTATTAC-CATG 1363
Query 1380 TCAAATCATTATTTTCTCTGCTTACTTT-GCGTTAGCTACTCCTTTTAATAAGTTCTATT 1438
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1364 TCAAATCATTATTTTCTCTGCTTACTTTTGCATTAGCTACTCCTTTCAATAAGTTCTATT 1423
Query 1439 ATATTGAAGTTATCTATCT--CT--CTTGATCTATTTAAACTTG-AAA 1481
||||||||||||||||||| || |||||||||||| |||||| |||
Sbjct 1424 ATATTGAAGTTATCTATCTATCTATCTTGATCTATTTGAACTTGGAAA 1471
> Ahg932060 jgi|Araly1|932060|scaffold_400048.1
Length=1293
Score = 1110 bits (601), Expect = 0.0
Identities = 922/1079 (85%), Gaps = 14/1079 (1%)
Strand=Plus/Plus
Query 225 CCTCCCTCACCGTCCGTGCCGCTTCCT-CCTACGCCGATGAGCTTGTTAAGACAGCGAAA 283
|||| ||||||||||||||||||| || | |||||||| || || || || ||||| |||
Sbjct 148 CCTCTCTCACCGTCCGTGCCGCTT-CTGCTTACGCCGACGAACTCGTCAAAACAGCTAAA 206
Query 284 ACTATTGCGTCTCCCGGACGTGGAATCT-TGGCGATGGACGAGTCAAACGCGACTTGCGG 342
| || |||||||| |||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct 207 AAAATCGCGTCTCCGGGACACGGAAT-TATGGCGATGGATGAGTCAAACGCGACTTG-TG 264
Query 343 GAAA-CGTTTGGATTCGATAGGGCTAGAGAACACTGAGGCAAATCGTCAAGCTTTCCGGA 401
|||| ||||||| || || |||||||||||||| ||||| || |||||||||| |||||
Sbjct 265 GAAAGCGTTTGGCGTCCATTGGGCTAGAGAACACGGAGGCTAACCGTCAAGCTTACCGGA 324
Query 402 CTTTGCTGGTCTCTGCACCGGGACTCGGACAGTACGTCTCCGGCGCAATTCTATTTGAGG 461
| ||||| || || || || ||||| ||||||||| ||||||| || || || || ||||
Sbjct 325 CGTTGCTTGTGTCGGCTCCAGGACTGGGACAGTACATCTCCGGAGCTATCCTGTTCGAGG 384
Query 462 AGACTCTGTACCAGTCTACCACCGAAGGCAAGAAAATGGTCGACGTCCTCGTCGAGCAGA 521
||||| ||||||| || |||||||| |||||||||||||| || || ||||| |||||||
Sbjct 385 AGACTTTGTACCAATCCACCACCGACGGCAAGAAAATGGTTGATGTTCTCGTTGAGCAGA 444
Query 522 ACATTGTCCCTGGTATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTGGATCCAACAATG 581
|||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 445 ACATCGTCCCTGGCATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTGGGTCTAACGACG 504
Query 582 AGTCATGGTGCCAAGGACTAGATGGTCTATCATCTCGAACTGCTGCTTACTATCAACAGG 641
||||||||||||||||||| || ||| || | ||||| || ||||||||||| ||||| |
Sbjct 505 AGTCATGGTGCCAAGGACTTGACGGTTTAGCCTCTCGTACCGCTGCTTACTACCAACAAG 564
Query 642 GTGCGCGTTTCGCCAAATGGCGTACTGTCGTGAGCATTCCTAACGGTCCGTCTGCCCTCG 701
|||| ||||||||||||||||||||||| ||||||||||| || || || ||||| | |
Sbjct 565 GTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCAAATGGACCCTCTGCTTTGG 624
Query 702 CCGTCAAAGAAGCTGCTTGGGGTCTTGCTCGATACGCTGCCATTTCACAGGACAGCGGTT 761
| || |||||||| |||||||| |||||||| |||||||| ||||| ||||||||||||
Sbjct 625 CTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTACGCTGCTATTTCTCAGGACAGCGGTC 684
Query 762 TGGTTCCGATTGTTGAGCCAGAGAT-CTTGTTGGATGGAGAACACGACATTGACAGAACA 820
|||| |||||||| ||||||||||| || |||||| |||||||||| ||||||||| |||
Sbjct 685 TGGTGCCGATTGTGGAGCCAGAGATTCT-GTTGGACGGAGAACACGGCATTGACAGGACA 743
Query 821 TACGACGTAGCAGAGAAGGTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTC 880
||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 744 TACGAGGTTGCAGAGAAGGTTTGGGCTGAGGTCTTCTTCTACCTCGCTCAGAACAACGTC 803
Query 881 ATGTTTGAAGGTATCCTCCTAAAACCGAGCATGGTGACTCCCGGAGCTGAGTCTAAAGAC 940
|||| |||||||| ||||| || ||||||||||| ||||| ||||||||| ||| ||||
Sbjct 804 CTGTTCGAAGGTATTCTCCTGAAGCCGAGCATGGTTACTCCAGGAGCTGAGGCTACAGAC 863
Query 941 AGAGCTACTCCTGAACAAGTTGCCGCCTACACCCTCAAGCTCCTCCGCAACAGAGTCCCT 1000
||||||||||| || || ||||| ||||||| ||||||||||| ||||||||| |||||
Sbjct 864 AGAGCTACTCCCGAGCAGGTTGCTTCCTACACTCTCAAGCTCCTTCGCAACAGAATCCCT 923
Query 1001 CCCGCAGTCCCCGGAATCATGTTTTTGTCCGGAGGACAGTCGGAGGTGGAGGCAACACTC 1060
||||| ||||||||||||||||| ||||| || || ||||| ||| ||||||| || ||
Sbjct 924 CCCGCTGTCCCCGGAATCATGTTCTTGTCTGGTGGGCAGTCCGAGTTGGAGGCGAC-CTT 982
Query 1061 -AACTTGAACGCAATGAACCAGGCACCAAACCCATGGCACGTGTCCTTCTCCTACGCACG 1119
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 983 GAACTTAAACGCAATGAACCAGGCACCGAACCCATGGCACGTGTCCTTCTCCTATGCACG 1042
Query 1120 TGCGTTGCAGAACACTTGTCT-GAAAACATGGGGCGGCAGACCCGAGAACGTGAACGCAG 1178
||| |||||||||||||| || ||| |||||||| ||||| ||||||||||| || |
Sbjct 1043 TGCCTTGCAGAACACTTG-CTTGAAGACATGGGGAGGCAGGGAAGAGAACGTGAAGGCGG 1101
Query 1179 CTCAG-ACCACTCTCTTGGCCCGTGCCAAGGCCAATTCGTTGGCTCAGCTCGGAAAATAC 1237
||||| || | |||||||||| | ||||| ||||||||| ||||||||||||| ||||||
Sbjct 1102 CTCAGGAC-ATTCTCTTGGCCAGAGCCAAAGCCAATTCGCTGGCTCAGCTCGGGAAATAC 1160
Query 1238 ACCGGTGAGGGTGAGTCCGAAGAGGCTAAGGAGGGCATGTTCGTCAAAGGGTACACCTA 1296
|| || || || |||||||| || || |||||||| ||||| || ||||| ||||||||
Sbjct 1161 ACAGGAGAAGGCGAGTCCGAGGAAGCCAAGGAGGGTATGTTTGTAAAAGGCTACACCTA 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5