BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39080.1
Length=2884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490676 jgi|Araly1|490676|fgenesh2_kg.7__109__AT4G39080.1 4621 0.0
Ahg481007 jgi|Araly1|481007|fgenesh2_kg.4__67__AT2G21410.1 2774 0.0
> Ahg490676 jgi|Araly1|490676|fgenesh2_kg.7__109__AT4G39080.1
Length=2882
Score = 4621 bits (2502), Expect = 0.0
Identities = 2773/2900 (96%), Gaps = 34/2900 (1%)
Strand=Plus/Plus
Query 1 CCGTCTTGGCTTCGTGGTGGTCTCTCTGACATTATCGTCAGACAAATAATTTCT-AAATA 59
||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 1 CCGTCTTTGCTTCGTCGTGGTCTCTCTGACATTATCGTCAGACAAATAACTTCTAAAAAA 60
Query 60 TCTCTCCTCTCCTCTCGTTTGATTCCaaaaaaaaaaGCTCATCGACGAACGAACGATGGC 119
|| || ||||||||||||||||| | |||||||||||| || ||||||||||||
Sbjct 61 TCAATCATCTCCTCTCGTTTGATT-C----AAAAAAGCTCAT---CG-ACGAACGATGGC 111
Query 120 GGAAAGTGGCGGTGGCGGTGGCTGTTGTCCGCCGATGGATCTGATGCGTTCAGAGACGAT 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GGAAAGCGGCGGTGGCGGTGGCTGTTGTCCGCCGATGGATCTGATGCGTTCAGAGACGAT 171
Query 180 GCAACTTGTTCAGCTCATTGTTCCCATGGAATCTGCTCATCTCACCGTCTCTTACCTTGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GCAACTTGTTCAGCTCATTGTTCCCATGGAATCTGCTCATCTCACCGTCTCTTACCTTGG 231
Query 240 AGATCTTGGCCTCGTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCATTTCAACGTAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGATCTTGGCCTCGTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCATTTCAACGTAC 291
Query 300 TTACGCAGCACAGATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGA 359
||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 292 TTACGCAGCTCAGATTAAAAGATGTGGAGAGATGGCACGAAAAATTCGTTTCTTCAGAGA 351
Query 360 TCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATGACATTGA 419
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 352 TCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCTAGTGAAAGAAAATGACATTGA 411
Query 420 CTTGGATGATGTTGAGGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGC 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CTTGGATGATGTTGAGGTCAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAAATCAATGC 471
Query 480 TAATAATGACAAGTTGCAGCGCTCCTATAATGAGCTTATGGAGTACAAGTTGGTTCTTCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TAATAATGACAAGTTGCAGCGCTCCTATAATGAGCTTATGGAGTACAAGTTGGTTCTTCA 531
Query 540 GAAGGCTGGTGAGTTCTTTTCTTCTGCTCATAGAAGTGCCGCAGATCAACAGAGAGAGAC 599
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 532 GAAGGCTGGTGAGTTCTTTTCTTCTGCTCATAGAAGTGCCACAGATCAACAGAGTGAGAT 591
Query 600 AGAATCACAACAAGCGGGTGAAGATCTGCTGGAGTCTCCTTTGTTACAGGAAGAGAAGTC 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGAATCACAACAAGCAGGTGAAGATCTGCTGGAGTCTCCTTTGTTACAGGAAGAGAAGTC 651
Query 660 CATTGATTCGACAAAGCAAGTAAAGCTTGGATTTCTTACCGGATTAGTGCCTCGTGAAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CATTGATTCGACAAAGCAAGTAAAGCTTGGATTTCTTACCGGATTAGTGCCTCGTGAAAA 711
Query 720 GTCTATGGTCTTTGAGAGGATTCTGTTCCGTGCGACCAGGGGCAACATTTTTATCCGACA 779
||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 712 GTCTATGGTGTTTGAGAGGATTCTATTCCGTGCGACTAGGGGCAACATCTTTATCCGACA 771
Query 780 GACTGTCATTGAGGAGCCAGTCATTGATCCCAACTCTGGGGAGAAGGCTGAGAAAAATGT 839
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 772 GACTGTCATTGAGGAGCCGGTCATTGATCCCAACACTGGGGAGAAGGCTGAGAAAAATGT 831
Query 840 TTTTGTTGTCTTCTATTCCGGGGAAAGAGCGAAAAGCAAAATTCTGAAAATATGTGAAGC 899
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 832 TTTTGTTGTCTTCTATTCCGGGGAAAGAGCGAAAAGCAAAATTCTTAAAATATGTGAAGC 891
Query 900 TTTTGGGGCCAATCGTTATCCTTTCAGTGAGGACCTTGGAAGACAAGCTCAGATGATAAC 959
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 892 TTTTGGGGCTAATCGTTATCCTTTCAGTGAGGACCTTGGAAGACAAGCTCAAATGATAAC 951
Query 960 CGAGGTTTCTGGTCGATTATCCGAGCTTAAAACCACGATAGATGCTGGGTTAGGTCAGCG 1019
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 952 CGAGGTTTCGGGTCGATTATCAGAGCTTAAAACCACGATAGATGCTGGGTTAGGTCAACG 1011
Query 1020 TAACATTCTTTTGCAGACCATTGGAGATAAGTTTGAACTATGGAACCTCAAGGTACGCAA 1079
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1012 TAACATTCTTTTGCAGACCATCGGAGATAAGTTTGAGCTATGGAACCTCAAGGTACGCAA 1071
Query 1080 AGAGAAAGCTATCTATCATACATTGAACATGCTTAGTCTTGATGTGACGAAGAAGTGCCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AGAGAAAGCTATCTATCATACATTGAACATGCTTAGTCTTGATGTGACGAAGAAGTGCCT 1131
Query 1140 CGTGGCCGAGGGCTGGAGTCCTGTCTTTGCATCAAGAGAAATTCAAGATGCATTACAGCG 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1132 CGTGGCCGAGGGCTGGAGTCCTGTCTTTGCATCAAAAGAAATTCAAGATGCATTACAGCG 1191
Query 1200 TGCCGCCGTTGACTCCAATTCTCAAGTTGGATCAATTTTCCAGGTCCTAAGAACCAAAGA 1259
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1192 TGCTGCCGTTGATTCCAATTCTCAAGTTGGATCAATTTTCCAGGTCCTAAGGACCAAAGA 1251
Query 1260 GTCGCCACCAACTTATTTTCGCACAAACAAATTTACTTCTGCAATCCAGGAAATTGTTGA 1319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GTCACCACCAACTTATTTTCGCACAAACAAATTTACTTCTGCAATCCAGGAAATTGTTGA 1311
Query 1320 TGCGTATGGTGTGGCCAAGTATCAGGAAGCCAATCCAGGTGTATTCACCATTGTTACCTT 1379
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1312 TGCGTATGGTGTGGCCAAGTATCAGGAAGCCAATCCAGGTGTATTCACAATTGTTACCTT 1371
Query 1380 CCCCTTCCTTTTCGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGCATTCTGCTTGC 1439
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1372 CCCCTTCCTTTTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTATTCTGCTTGC 1431
Query 1440 AACTATGTACTTGATATTGAAAGAAAAGAAACTTGCCAGCCAGAAACTTGGGGATATTAT 1499
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1432 AACGATGTACTTGATATTGAGAGAAAAGAAACTTTCCAGCCAGAAACTTGGGGATATTAT 1491
Query 1500 GGAAATGGCTTTTGGTGGGCGTTATGTCATTTTGATGATGTCACTCTTCTCAATATACAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGAAATGGCTTTTGGTGGGCGTTATGTCATTTTGATGATGTCACTCTTCTCAATATACAC 1551
Query 1560 TGGAT-TAATCTACAACGAGTTCTTCTCTATACCATTCCCATTGTTTGCTCCTTCAGCGT 1618
||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1552 TGG-TCTAATCTACAACGAGTTCTTCTCTATACCATACCCATTGTTTGCTCCTTCAGCCT 1610
Query 1619 ATGATTGCCGGGATGTCTCTTGCAGCGAAGCTACAACAATTGGTTTGATAAAGGTCAGAG 1678
|||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1611 ATGATTGCCGTGATACCTCTTGCAGCGAGGCTACAACAATTGGTTTGATAAAGGTCAGAG 1670
Query 1679 ACACTTATCCATTTGGTCTAGATCCTGTGTGGCATGGATCCCGCAGTGAGCTGCCATTCC 1738
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1671 ACACTTATCCATTTGGTCTAGATCCTGTGTGGCATGGAAGTCGCAGCGAGCTGCCATTCC 1730
Query 1739 TGAACTCGCTGAAGATGAAAATGTCAATCCTTCTCGGAGTTTCTCAAATGAACCTCGGAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 TGAACTCGCTGAAGATGAAAATGTCAATCCTTCTCGGAGTTTCTCAAATGAACCTCGGAA 1790
Query 1799 TCATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGGTTCCAGT 1858
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCATAATGAGTTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGGTTCCAGT 1850
Query 1859 TCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTCTCAGTCCTCATCATCA 1918
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1851 TCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTCTCGGTCCTCATCATCA 1910
Query 1919 TAAAGTGGTGCACTGGTTCTCAAGCAGATTTGTATCATGTAATGATATATATGTTCCTGA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TAAAGTGGTGCACTGGTTCTCAAGCAGATTTGTATCATGTAATGATATATATGTTCCTGA 1970
Query 1979 GCCCAATGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACATTACAGCTTG 2038
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1971 GCCCAATGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACAGTGCAGCTTC 2030
Query 2039 TGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAAAGCCGTTCATCT 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAAAGCCGTTCATCT 2090
Query 2099 TGAAGAAACAACATGAAGCTAGGCATCAAGGCCAGGCGTACGCACCTCTTGACGAGACAG 2158
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 2091 TGAAGAAACAACATGAAGCTAGGCATCAAGGTCAGTTATACACACCTCTTGACGAGACAG 2150
Query 2159 ATGAGAGTCTTCATGTAGAGACAAACGGAGGAGGATCCCATGGGCATGAGGAGTTTGAAT 2218
| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2151 ACGAGAGTCTTCATGTAGAGACAAGCGGAGGA---TCCCATGGGCATGAGGAGTTTGAAT 2207
Query 2219 TCAGCGAGATATTTGTGCATCAGCTGATTCACACCATAGAGTTTGTGCTTGGAGCTGTTT 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 TCAGCGAGATATTTGTGCATCAGCTGATTCACACCATAGAGTTTGTGCTTGGAGCTGTTT 2267
Query 2279 CCAACACCGCTTCTTACCTGCGTCTATGGGCTCTCAGTCTTGCCCACTCGGAGCTGTCAT 2338
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 2268 CCAACACCGCTTCTTACCTGCGTTTATGGGCTCTCAGTCTTGCCCACTCAGAGCTATCAT 2327
Query 2339 CAGTCTTCTATGAGAAGGTCCTCCTTCTCGCTTGGGGTTACAACAATCCGTTGATCCTG- 2397
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 2328 CAGTCTTCTATGAGAAGGTCCTCCTTCTCGCTTTTGGTTACAACAATGTGTTGATC-TGG 2386
Query 2398 ATCGTTGGGGTCTTGGTGTTCATATTCGCAACCGTGGGAGTTTTGCTGGTGATGGAGACA 2457
||||||||| || | |||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 2387 ATCGTTGGGATCATCGTGTTCATATTCGCGACCGTGGGAGTGTTGCTGGTGATGGAGTCA 2446
Query 2458 CTAAGCGCGTTCCTTCACGCGCTGCGTCTTCACTGGGTTGAGTTTCAGAACAAATTCTAC 2517
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2447 CTAAGCGCGTTCCTTCACGCGCTGCGTCTCCACTGGGTTGAGTTTCAGAATAAATTCTAC 2506
Query 2518 GAAGGAGATGGTTACAAGTTCGCTCCTTTCACTTTCATTTTCACGGCAAACGAAGACGAG 2577
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2507 GAAGGAGATGGTTACAAGTTCGCTCCTTTCACTTTCGTTTTCACCGCAAACGAAGACGAG 2566
Query 2578 TGATGTGATTCATTCCTCTCATCCTCTGCATTTTGCATATATAAGGTACAAAAAACATGT 2637
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2567 TGATGTGATTCATTCCTCTCATCCGCTGCATTTTGCATATATAAGGTACAAA---CATGT 2623
Query 2638 TTGATTTCTTTCTATTAAAATCCAATATATTTTTTCCCCTTCTCTCCGTATAAGGGTCAA 2697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2624 TTGATTTCTTTCTATTAAAATCCAATATATTTTTTCCCCTTCTCTCCGTATAAGGGTCAT 2683
Query 2698 TTAAATTTATTTATTTGCCTGTGGAGATAAATTTTTACCATAAAAAATGAGGGGATACTT 2757
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2684 TTAAATTTATTTATTTGCCTGTGGAGATAAATTTTTACCA-AAAAAATGAGGGGATACTT 2742
Query 2758 GGATCTGTACGAGGCA----TA-AAAACGAT----tt-gttgttgttgtt-t--gtttgG 2804
|||| ||||||||||| || |||||||| || |||||||||||| | ||||||
Sbjct 2743 GGATTTGTACGAGGCAAAAATACAAAACGATACGATTTGTTGTTGTTGTTGTTTGTTTGG 2802
Query 2805 AATTAAATAATACGCTGTGGATATGAATAAAGTCAGGAATTGGACCTTCCCAACATGTAT 2864
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2803 AATTAAATAATAAGCTGTGGATATGAATAAATTGAGGAATTGGACCTTCCCAACATGTAT 2862
Query 2865 ATGTTTTTTCAGGCCGTGGG 2884
|||||||| ||| || ||||
Sbjct 2863 ATGTTTTTCCAGCCCATGGG 2882
> Ahg481007 jgi|Araly1|481007|fgenesh2_kg.4__67__AT2G21410.1
Length=2635
Score = 2774 bits (1502), Expect = 0.0
Identities = 2173/2495 (87%), Gaps = 53/2495 (2%)
Strand=Plus/Plus
Query 115 ATGGCGGAAAGTGGCGGTGGCGGTGGCTGTTGTCCGCCGATGGATCTGATGCGTTCAGAG 174
|||||||| ||| |||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 13 ATGGCGGAGAGTCACGGT---GGTGGTTGCTGTCCGCCGATGGATCTGATGCGGTCAGAG 69
Query 175 ACGATGCAACTTGTTC-AGCTCATTGTTCCCATGGAATCTGCTCATCTCACCGTCTCTTA 233
||||||| || |||| || |||| ||||||||||||||||||||||| |||||||||||
Sbjct 70 CCGATGCATCTCGTTCAAG-TCATCGTTCCCATGGAATCTGCTCATCTTACCGTCTCTTA 128
Query 234 CCTTGGAGATCTTGGCCTCGTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCATTTCA 293
||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 129 TCTTGGCGATCTTGGCCTCGTCCAGTTCAAAGATCTTAATTCTGACAAGAGCCCATTTCA 188
Query 294 ACGTACTTACGCAGCACAGATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTT 353
||| |||||||| || |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 189 ACGCACTTACGCTGCTCAGATTAAAAGATGTGGAGAGATGGCACGGAAGCTACGTTTCTT 248
Query 354 CAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCA-AG-GGAAAGAAAAT 411
|| || ||||||||||| || |||||| | |||| || | || || | |||| | |
Sbjct 249 CAAAGAGCAAATGTCAAAGGCTGGAGTTACTCCCAAAGAGA-CCATAGATG-AAGATATT 306
Query 412 GACATTGACTTGGATGATGTTGAGGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAA 471
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 307 GATATTGATTTGGATGATGTAGAGGTAAAGCTTGGAGAGCTAGAAGCTGAACTTGTTGAA 366
Query 472 ATCAATGCTAATAATGACAAGTTGCAGCGCTCCTATAATGAGCTTATGGAGTACAAGTTG 531
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct 367 ATCAATGCTAATAATGACAAGTTGCAGCGCTCTTATAATGAACTTGTGGAGTACAAGCTC 426
Query 532 GTTCTTCAGAAGGCTGGTGAGTTCTTTT-CTTCTGCTCATAGAAGTGCCG-CAGATCAAC 589
|||||| |||||||||||||||| |||| |||| || ||||||||||| | | |||||
Sbjct 427 GTTCTTGAGAAGGCTGGTGAGTT-TTTTGCTTCAGCCCATAGAAGTGCTAAC-GCTCAAC 484
Query 590 AGAGAGAGACAGAATCACAACAAGCGGGTGAAGATCTGCTGGAGTCTCCTTTGTTACAGG 649
||| |||| |||| || |||||| || |||||| || |||||| |||||||||| ||||
Sbjct 485 GGAGTGAGATAGAAACAGAACAAGTGGATGAAGACCTCCTGGAGGCTCCTTTGTTGCAGG 544
Query 650 AAGAGAAGTCCATTGATTCGACAAAGCAAGTAAAGCTTGGATTTCTTACCGGATTAGTGC 709
|||| ||||| ||||| | ||||||||||||||||||||||| || || || ||||||
Sbjct 545 AAGAAAAGTCTGTTGATCCAACAAAGCAAGTAAAGCTTGGATTCCTCACTGGGCTAGTGC 604
Query 710 CTCGTGAAAAGTCTATGGTCTTTGAGAGGATTCTGTTCCGTGCGACCAGGGGCAACATTT 769
||||||||||||||||||| || |||||||| || || ||||| || ||||||||||| |
Sbjct 605 CTCGTGAAAAGTCTATGGTGTTCGAGAGGATCCTATTTCGTGCAACTAGGGGCAACATCT 664
Query 770 TTATCCGACAGACTGTCATTGAGGAG-CCAGTCATTGATCCCAACTCTGGGGAGAAGGCT 828
| || |||||| ||||||| |||||| || || ||||||||||||||||||||||||||
Sbjct 665 TCATACGACAGTCTGTCATCGAGGAGTCC-GTTGTTGATCCCAACTCTGGGGAGAAGGCT 723
Query 829 GAGAAAAATGTTTTTGTTGTCTTCTATTCCGGGGAAAGAGCGAAAAGCAAAATTCTGAAA 888
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 724 GAGAAAAATGTATTTGTTGTCTTCTATTCTGGGGAAAGAGCAAAAAGCAAAATTCTTAAG 783
Query 889 ATATGTGAAGCTTTTGGGGCCAATCGTTATCCTTTCAGTGAGGACCTTGG-AAGACAAGC 947
|||||||||||||||||||||||||| ||||||||||| || ||||| || ||| |||||
Sbjct 784 ATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGCGAAGACCTGGGGAAG-CAAGC 842
Query 948 TCAGATGATAACCGAGGTTTCTGGTCGATTATCCGAGCTTAAAACCACGATAGATGCTGG 1007
||| ||||| || |||||||| ||||| ||||| ||||||||||| || |||| ||||||
Sbjct 843 TCAAATGATGACTGAGGTTTCAGGTCGGTTATCAGAGCTTAAAACTACCATAGGTGCTGG 902
Query 1008 GTTAGG-TCAGCGTAACATTCTTTTGCAGACCATTGGAGATAAGTTTGAACTATGGAACC 1066
||| || ||| || |||||||||||| |||||||||||||||| ||||| | ||||||||
Sbjct 903 GTT-GGATCACCGCAACATTCTTTTGGAGACCATTGGAGATAAATTTGAGCAATGGAACC 961
Query 1067 TCAAGGTACGCAAAGAGAAAGCTATCTATCATACATTGAACATGCTTAGTCTTGATGTGA 1126
||||||| |||||||| ||||| |||||||| || ||||||||||||||||| |||||||
Sbjct 962 TCAAGGTTCGCAAAGAAAAAGCAATCTATCACACCTTGAACATGCTTAGTCTAGATGTGA 1021
Query 1127 CGAAGAAGTGCCTCGTGGCCGAGGGCTGGAGTCCTGTCTTTGCATCAAGAGAAATTCAAG 1186
| ||||||||||| |||| || ||||||||||||||||||||| ||| |||| ||||||
Sbjct 1022 CTAAGAAGTGCCTTGTGGGTGAAGGCTGGAGTCCTGTCTTTGCAGCAACAGAAGTTCAAG 1081
Query 1187 ATGCATTACAGCGTGCCGCCGTTGACTCCAATTCTCAAGTTGGATCAATTTTCCAGGTCC 1246
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 ATGCATTGCAGCGTGCCGCGGTTGACTCCAATTCTCAAGTTGGATCAATTTTCCAAGTCC 1141
Query 1247 TAAGAACCAAAGAG-TCGCCACCAACTTATTTTC-GCACAAACAAATTTACTTCTGCAAT 1304
| || ||||||||| | ||| ||||||| ||||| ||||||||||||||||| |||| |
Sbjct 1142 TGAGGACCAAAGAGAT-GCCTCCAACTT-TTTTCCGCACAAACAAATTTACTACTGCTTT 1199
Query 1305 CCAGGAAATTGTTGATGCGTATGGTGTGGCCAAGTATCAGGAAGCCAATCC-AGGTGTAT 1363
|||||||||||||||||| || ||||||||||| |||||||| |||||||| || |||||
Sbjct 1200 CCAGGAAATTGTTGATGCATACGGTGTGGCCAAATATCAGGAGGCCAATCCTAG-TGTAT 1258
Query 1364 TCACCATTGTTACCTTCCCCTTCCT-TTTCGCTGTTATGTTTGGTGATTGGGGGCATGGA 1422
|||| |||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct 1259 TCACAATTGTTACCTTCCCCTTCCTGTTT-GCTGTTATGTTTGGTGACTGGGGTCATGGA 1317
Query 1423 ATATGCATTCTGCTTGCAACTATGTACTTGATATTGAAAGAAAAGAAACTTGCCAGCCAG 1482
|| ||| | ||||||||||| ||||| || ||||||| ||||||||||||| ||||||||
Sbjct 1318 ATCTGCCTGCTGCTTGCAACCATGTATTTAATATTGAGAGAAAAGAAACTTTCCAGCCAG 1377
Query 1483 AAACTTGGGGATATTATGGAAATGGCTTTTGGTGGGCGTTATGTCATTTTGATGATGTCA 1542
||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||
Sbjct 1378 AAACTCGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCA 1437
Query 1543 CTCTTCTCAATATACACTGGATTAATCTACAACGAGTTCTTCTCTATACCATTCCCATTG 1602
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1438 CTCTTCTCAATATACACTGGTTTAATCTACAACGAGTTCTTCTCTATACCATTTCCATTG 1497
Query 1603 TTTGCTC-CTTCAGCGTATGATTGCCGGGATGTCTCTTGCAGCGAAGCTACAACAATTGG 1661
|||||| || |||| || || ||||| |||||||||||||| || ||||| ||||||||
Sbjct 1498 TTTGCTAGCT-CAGCATACGAATGCCGTGATGTCTCTTGCAGTGAGGCTACTACAATTGG 1556
Query 1662 TTTGAT-AAAGGTCAGAGACACTTATCCATTTGGTC-TAGATCCTGTGTGGCATGG-ATC 1718
| |||| ||| | ||||||||||||||||||| | | |||||||||||| | || | |
Sbjct 1557 TCTGATCAAAACCC-GAGACACTTATCCATTTGG-CGTGGATCCTGTGTGGAAAGGTA-C 1613
Query 1719 CCGCAGTGAGCTGCCATTCCTGAACTCGCTGAAGATGAAAATGTCAATCCTTCTCGGAGT 1778
|||||||||||| ||||||||||| || || ||||||||||||||||| ||| | |||||
Sbjct 1614 CCGCAGTGAGCTACCATTCCTGAATTCACTTAAGATGAAAATGTCAATTCTTATTGGAGT 1673
Query 1779 TTCTCAAATGAACCTCGGAATCATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAG 1838
| | |||||||||||||||||||||||||||| ||||||||| | |||||||||| |
Sbjct 1674 TGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGT-G 1732
Query 1839 -TGTAAATATATGGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCT 1897
|||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 1733 CTGTAAACGTATGGTTCCAGTTCGTTCCCCAGATGATATTCTTGAACTGCTTGTTTGGCT 1792
Query 1898 ATCTCTCAGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTGTATCATG 1957
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1793 ATCTTTCGGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTATATCATG 1852
Query 1958 TAATGATATATATGTTCCTGAGCCCAATGGACGAGTTAGGAGAGAATCAACTGTTCCCTC 2017
||||||| || |||||||||||||| ||||| || |||||||||||||| || ||||||
Sbjct 1853 TAATGATCTACATGTTCCTGAGCCCTATGGATGATTTAGGAGAGAATCAGCTTTTCCCTA 1912
Query 2018 ACCAGAAAACATTACAGCTTGTGCTTC-TCTTTCTGGCTCTTG-TTTCTGTTCCGTGTAT 2075
||||||||| | ||||||| ||| ||||||||||| ||| ||||||||||||| ||
Sbjct 1913 ACCAGAAAATAGTACAGCTCACA-TTCCTCTTTCTGGCT-TTGGTTTCTGTTCCGTGGAT 1970
Query 2076 GTTGCTT-CCAAAGCCGTTCATCTTGAAGAAACAACATGAAGCTAGGCATCAAGGCCAGG 2134
|||| || |||||||| |||||| |||||||||||||||||||||| |||||||| | |
Sbjct 1971 GTTG-TTGCCAAAGCCATTCATCCTGAAGAAACAACATGAAGCTAGACATCAAGGTCTGT 2029
Query 2135 CGTACGCACCTCTTGACGAGACAGATGAGAGTCTTCATGTAGAGACAAACGGAGGAGGAT 2194
| ||||||| |||||| |||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 2030 CATACGCACATCTTGATGAGACAGATGAGAGTCTTCAAGTAGATACAAATGGGGGAGGA- 2088
Query 2195 CCCATGGGCATGAGGAGTTTGAATTCAGCGAGATATTTGTGCATCAGCTGATTCACACCA 2254
| |||| || || ||||||||||||||||| || |||||||| || || ||||||||||
Sbjct 2089 C--ATGGACACGAAGAGTTTGAATTCAGCGAAATCTTTGTGCACCAACTCATTCACACCA 2146
Query 2255 TAGAGTTTGTGCTTGGAGCTGTTTCCAACACCGCTTCTTACCTGCGTCTATGGGCTCTCA 2314
| || |||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||
Sbjct 2147 TTGAATTTGTGCTTGGAGCTGTTTCCAACACTGCTTCTTATCTTCGTCTCTGGGCCCTCA 2206
Query 2315 GTCTTGCCCACTCGGAGCTGTCATCAGTCTTCTATGAGAAGGTCCTCCTTCTCGCTTGGG 2374
|||| |||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||
Sbjct 2207 GTCTCGCCCACTCGGAGTTGTCGTCAGTCTTCTACGAGAAGGTCCTCCTTATGGCTTGGG 2266
Query 2375 GTTACAACAATC-CGTTGATCCTGATCGTTGGGGTCTTGGTGTTCATATTCGCAACCGTG 2433
||| |||||| | || ||| |||| ||||| |||| || ||||| || || || |||
Sbjct 2267 GTTTTAACAATGTC-TTCATCTTGATTATTGGGATCTTCGTCTTCATCTTTGCGACTGTG 2325
Query 2434 GGAGTT-TTGCTGGTGATGGAGACACTAAGCGCGTTCCTTCACGCGCTGCGTCTTCACTG 2492
||||| || || |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 2326 GGAGTGCTT-CTTGTGATGGAGACATTGAGTGCGTTCCTTCACGCGCTGCGTCTTCACTG 2384
Query 2493 GGTTGAGTTTCAGAACAAATTCTACGAAGGAGATGGTTACAAGTTCGCTCCTTTCACTTT 2552
||| |||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2385 GGTGGAGTACCAGAACAAGTTCTACGAAGGCGATGGTTACAAGTTTGCTCCTTTCACTTT 2444
Query 2553 CATTTTC-ACGGCAAACGAAGACGAGTGATGTGAT 2586
|| | || |||| ||||||||||||||||| ||||
Sbjct 2445 CACTCTCGACGG-AAACGAAGACGAGTGAT-TGAT 2477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108861920210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5