BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39090.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490677 jgi|Araly1|490677|fgenesh2_kg.7__110__AT4G39090.1 2025 0.0
> Ahg490677 jgi|Araly1|490677|fgenesh2_kg.7__110__AT4G39090.1
Length=1288
Score = 2025 bits (1096), Expect = 0.0
Identities = 1204/1257 (96%), Gaps = 4/1257 (0%)
Strand=Plus/Plus
Query 150 AAATCAAATGGATCGTCTTAAGCTTTATTTCTCCGTTTTCGTTTTGTCTTTCTTTATCGT 209
|||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||
Sbjct 35 AAATCAAATGGATCGTCTTAAGCTTTGTTTCTCCGTCTTCGTTTTGTTTTTCTTTCTCGT 94
Query 210 CTCGGTTTCGTCGTCTGATGTCAACGACGGCGATGATCTCGTGATCCGTCAGGTGGTTGG 269
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CTCCGTTTCGTCGTCTGATGTCAACGACGGCGATGATCTCGTGATCCGTCAGGTGGTTGG 154
Query 270 TGGAGCCGAGCCTCAGGTTTTGACCTCAGAGGATCACTTTTCTCTCTTCAAGCGGAAGTT 329
|||||||||||| |||||||||||||| ||||||||||||||||| |||||| | |||||
Sbjct 155 TGGAGCCGAGCCCCAGGTTTTGACCTCCGAGGATCACTTTTCTCTGTTCAAGAGCAAGTT 214
Query 330 CGGGAAGGTCTACGCTTCCAACGAGGAGCATGACTATAGATTCTCGGTTTTCAAAGCGAA 389
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 215 CGGGAAGGTGTACGCATCCAACGAGGAGCATGACTACAGATTCTCGGTTTTCAAGGCGAA 274
Query 390 TCTCAGGCGAGCGAGGCGTCACCAGAAGTTGGATCCGTCGGCGAC-TCATGGTGTTACGC 448
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 275 TCTGAGGCGAGCGAGGCGTCACCAGAAGTTGGATCCGTCGGCG-CGTCATGGTGTAACGC 333
Query 449 AGTTCTCAGATCTGACTCGGTCTGAGTTCCGTAAGAAGCACTTGGGGGTTAGAAGTGGCT 508
||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 334 AGTTCTCAGATCTGACTCGGTCTGAGTTCCGGAAGAAGCATTTGGGGGTTAGAGGTGGCT 393
Query 509 TTAAGCTTCCTAAAGATGCCAACAAGGCTCCGATTCTCCCTACCGAAAATCTCCCTGAGG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 394 TTAAGCTTCCTAAAGATGCCAACAAGGCTCCGATTCTCCCTACCGAAAATCTCCCGGAGG 453
Query 569 ATTTTGATTGGAGAGATCATGGCGCCGTTACTCCCGTCAAAAATCAGGGATCTTGCGGCT 628
| |||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||||
Sbjct 454 ACTTTGATTGGAGAGATCGTGGTGCTGTTACCCCCGTCAAGAATCAGGGATCTTGCGGCT 513
Query 629 CTTGCTGGAGTTTCAGCGCCACTGGAGCTTTGGAAGGTGCTAACTTCCTCGCTACCGGCA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTTGCTGGAGTTTCAGCGCCACTGGAGCTTTGGAAGGTGCTAACTTCCTCGCTACCGGCA 573
Query 689 AACTCGTCAGCCTCAGCGAACAACAGCTCGTCGACTGTGATCACGAGTGTGATCCCGAGG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 574 AACTCGTCAGCCTCAGCGAACAACAGCTCGTCGACTGTGATCACGAGTGTGATCCAGAGG 633
Query 749 AGGCAGATTCCTGCGACTCTGGTTGCAATGGTGGGCTAATGAACAGCGCTTTTGAATACA 808
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGGCAGGTTCCTGCGACTCTGGTTGCAATGGTGGGCTAATGAACAGCGCTTTTGAATACA 693
Query 809 CCCTCAAAACCGGAGGGCTCATGAAAGAAGAAGACTATCCTTACACCGGAAAGGACGGCA 868
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CCCTCAAAACCGGAGGCCTCATGAAAGAAGAAGACTATCCTTACACCGGAAAGGACGGCA 753
Query 869 AGACCTGCAAGCTAGACAAGTCCAAGATCGTTGCCTCTGTCTCCAACTTCAGTGTTATCT 928
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AGACCTGCAAGTTAGACAAGTCCAAGATCGTTGCCTCTGTCTCCAACTTCAGTGTTATCT 813
Query 929 CCATTGATGAAGAACAGATTGCTGCAAACCTTGTCAAGAACGGACCTCTTGCTGTAGCCA 988
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 814 CCATTGATGAAGAACAGATTGCTGCAAATCTTGTCAAGAACGGTCCTCTTGCTGTAGCCA 873
Query 989 TCAACGCTGGCTATATGCAGACTTACATTGGAGGAGTCTCATGCCCTTACATATGCACCA 1048
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 874 TCAACGCTGGCTATATGCAGACTTACATTGGAGGAGTCTCGTGCCCTTACATATGCACCA 933
Query 1049 GGAGGCTCAACCACGGTGTCTTATTGGTTGGCTATGGAGCGGCAGGTTACGCTCCGGCTA 1108
|||||||||||||||||||||||||||| || |||||| | |||||||||||||| ||||
Sbjct 934 GGAGGCTCAACCACGGTGTCTTATTGGTCGGTTATGGATCCGCAGGTTACGCTCCAGCTA 993
Query 1109 GGTTCAAGGAGAAGCCTTACTGGATCATCAAGAACTCGTGGGGAGAGACTTGGGGTGAAA 1168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 994 GGTTCAAGGAGAAGCCTTACTGGATCATCAAGAACTCGTGGGGAGAGACTTGGGGTGAGA 1053
Query 1169 ATGGTTTCTACAAAATCTGCAAAGGCCGTAACATTTGTGGTGTTGACAGTATGGTCTCCA 1228
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 1054 ATGGTTTCTACAAAATCTGCAAAGGCCGTAACATTTGTGGCGTTGACAGTCTTGTCTCCA 1113
Query 1229 CTGTTGCAGCCACCGTCTCAACCACCGCCCATTAAGCATCTCGTCAATAAGTTTTAATTA 1288
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1114 CAGTTACAGCCACCGTCTCAGCCACCGCCCATTAAGCATCTCGTCAATAAGTTTTATTTA 1173
Query 1289 CTTTGGTGATTTGTATGAGCGAGCTCTCTTTGCGCTGCTGACTCTCTCTATTTATCTCTG 1348
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1174 CTTTGGTGATTTGTATGAGCGAGCTCTCTTTGCGCTGCTGACTCTCT--ATTTATCTCTG 1231
Query 1349 CTTCTTGCTTGTAAATAAAATGCGTTCTATTGAGCAAAACCGTACAATGCTCATTAG 1405
| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1232 CGTCTTGCTTGTAAATAAAATGCATTCTATTGAGCAAAACCGTACAATGCTCGTTAG 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5