BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39240.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490697 jgi|Araly1|490697|fgenesh2_kg.7__130__AT4G39240.1 2047 0.0
> Ahg490697 jgi|Araly1|490697|fgenesh2_kg.7__130__AT4G39240.1
Length=1402
Score = 2047 bits (1108), Expect = 0.0
Identities = 1314/1412 (93%), Gaps = 19/1412 (1%)
Strand=Plus/Plus
Query 55 AGCGGTTATGCCTTTTTCCGCCGCGAGTTCGAGCTCCGTAAGCTCAATCGCTGAAGAACC 114
|||||||||||||| ||| | |||||||||||||| |||||||||||||| ||||||||
Sbjct 1 AGCGGTTATGCCTTATTCGGTTGCGAGTTCGAGCTCTGTAAGCTCAATCGCCGAAGAACC 60
Query 115 GCCGCCAAAGAAACAGCATGATCCATCGCCGTCCTGTTCATCGTATCTGTTACTACTTCC 174
|||||||||||| |||| ||||| || ||||| | |||||||| |||||||||||||||
Sbjct 61 GCCGCCAAAGAAGCAGCTTGATCTGTCACCGTCGTCTTCATCGTCTCTGTTACTACTTCC 120
Query 175 AGACGAAATCATTCTGAATTGCTTAGCACGCTTGCCGAAATGTTACTACCCGGTGATTTC 234
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AGATGAAATCATTCTGAATTGCTTAGCACGCTTGCCGAGATGTTACTACCCGGTGATTTC 180
Query 235 ACTCGTCTCCAAGACCTTTAGGCGTCTCATAGCTTCACCGGAGATCTACGTTGAAAGGTC 294
|||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 181 ACTCGTCTCCAAGACCTTCAGGCGTCTCATCGCTTCGCCGGAGATCTACGTCGAACGGTC 240
Query 295 ATTACTTCGCCGCACCGAGCGTGTCCTTTATGTTGTGCTTAGATCTCACGCTACAGAAAC 354
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 241 ATTACTCCGCCGCACTGAGCGTGTTCTTTATGTTGTGCTTAGATCTCACGCTACGGAAAC 300
Query 355 TCCCCGATGGTACACTCTCAATTTCAAACCCTTTGGAAATGATTCAAATAACCATAGATT 414
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TCCTCGATGGTACACTCTCAATTTCAAACCCTTTGGAAATGATTCAATTAACCATAGATT 360
Query 415 GGTTCCGATTCCGTCGTTTCCTTCGATTCCTTGCTGGGGAATGTCAATTGTCGCTATTGA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTTCCGATTCCGTCGTTTCCTTCGATTCCTTGCTGGGGAATGTCAATTGTCGCTATTGA 420
Query 475 TTCTGAAATTTACGTCCTTGGTGGATGCATTGATAATGAATTGGTCTCCACTGGGTTTGT 534
||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 421 ATCTGAAATTTACGTCCTTGGTGGATGCATCGATGACGAATTGGTCTCCACTGGGTTTGT 480
Query 535 CGTCGAATGTCCATCTCACACGTGTCGTCTCCTCCCTAGCATGAAGCAGGCACGTGGCTG 594
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 TGTCGAATGTCCATCTCACACGTGTCGTCTCCTCCCTAGCATGAAGCAAGCACGTGGCTG 540
Query 595 CGCCGCCGTGGGATTTTTTGATGGGAAATTGTATGTAATCGGAGGTTGTAACCCTCTGTC 654
|||||||||||||| | || |||||| |||||||||||||||||||||||||||||||
Sbjct 541 TGCCGCCGTGGGATTCGTCGACGGGAAACTGTATGTAATCGGAGGTTGTAACCCTCTGTC 600
Query 655 TGTGAATTGGGTAGAGGCTTTTGATCTAAAGACTCAAACTTGGGAGTCTGGTTTGGGTGT 714
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 601 TGTGAATTGGGTTGAGGCTTTTGACCTAAAGACTCAAACTTGGGAGTCTGTTTTGGGTGT 660
Query 715 TAATAATGTGGAAATGCATGACTTAACCATCAGAAGTTTTGCGATAGATGATAAGATTTA 774
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 TCATAATGTGGAAATGCATGACTTAACCATCAGAAGTTTTGCGATAGATGGTAAGATTTA 720
Query 775 CATTATGGATCGAAAGAATAGCTTTGTTTATGATCCTAAAGAAGGTACG-TTGGAGACTG 833
|||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 721 CATTATGGATCGGAAGAATAGCTTTGTTTACGATCCTAAAGAAGGTA-GATTGGAGACTG 779
Query 834 ATGAGTTGTTGGACACACAATGGAGTGTTGGTTCTTGCGTCATTGATGGAAAGATTTACA 893
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 780 ATGAGTTGTTGGACACACAATGGAGTGTTGGTTCTTGCGTCATTGATGGCAGGATTTACA 839
Query 894 CTTTTGGTAGCAAGAATAGAATATGGGTGTTTGATCCAATTGCCATGGTTTGGGATCGCT 953
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 840 CTTTTGGTAGCAAGAATAGAATATGGGTGTTTGATCCAGTTGCCATGGTTTGGGATCGTT 899
Query 954 TGAAGGGTCTCGACGATCTTCCTGACAAGCGTGATGGCTCGAGAATGTCGAATCTCGGGG 1013
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
Sbjct 900 TGAAGGGTCTCGACGATCTTCCTGACAAGCGTGATGGTTCTAGAATGTCTAATCTCGGTG 959
Query 1014 GAAATCTTGCGATTATGTTTAACCTTGAGAAGGGTTCAACCAAAATCTGTTGCACGGAGA 1073
|||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 960 GAAATCTTGCAATTATGTTTAACCTTGGGAAGGGATCAACCAAAATATGTTGCACGGAGA 1019
Query 1074 TCAGATTGGAAAGGAGGGAAGGAGGAAAGATTTGGGGGACGGTCCTGTGGTCTAATATTG 1133
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 1020 TCAGATTGGAAAGGAGAGAAGGAGGAAAGTTTTGGGGGACGGTTCTGTGGTCTAATATCG 1079
Query 1134 TCATTACCTTGAAAGAACCTTCCACCATTGTACGATGTCTAACTGTAACAGTTTGATAAA 1193
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1080 TGATTACCTTGAAAGAACCTTCCACCATTGTACGATGTCTAGCTGTAACTGTTTGATAAA 1139
Query 1194 GCTTCAAGCTTGAAAATCATATCTGTAAACGTGTACCGGAGCAGCTTGTTCTGTTCAAGA 1253
|||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||
Sbjct 1140 GCTTCAAGCTTGAAAATC-T----GTAAACGTGTACCGAAGCAGCTTGGTCTGTTCAAGA 1194
Query 1254 TGAAACAAACAACATACGAGGCTTTATTGGATATTGGTATCCAGAACCTAATATAGATAT 1313
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 TGAAACAAACAACATACTAGGCTTTATTGGATGTTGGTATCCAGAACCTAATATAGATAT 1254
Query 1314 CTTTT-GGAACTTTGGGCTAAGTTATGCAATATATTTCTCTTGTTTCTTTGTTGTACGAC 1372
||||| ||| || |||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 1255 CTTTTTGGATCTATGGGCTAAGTTATGTAATTTTTTTCTCTTGTTTCTTTGTTGTACGAC 1314
Query 1373 TCTTATGTATGCA--A-GTA--TAT--TGTATGATTAATAGAAACTATGTTACCAGCTGT 1425
||||||||||||| | | | ||| |||||||| ||||| |||||||||||||||||
Sbjct 1315 TCTTATGTATGCATTATGCAAGTATACTGTATGATCAATAGCTACTATGTTACCAGCTGT 1374
Query 1426 TTGTTTAACAAAGATCAAACCAATAACATTTG 1457
||| ||||||||||||||||||||||||
Sbjct 1375 TTGG----CAAAGATCAAACCAATAACATTTG 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5