BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39260.1 Length=898 Score E Sequences producing significant alignments: (Bits) Value Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1 760 0.0 Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2 265 5e-70 > Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1 Length=788 Score = 760 bits (411), Expect = 0.0 Identities = 713/846 (84%), Gaps = 71/846 (8%) Strand=Plus/Plus Query 8 GTTATTACGTCACACCTGTTCTATAAATTAAGGCTGCGTCTTATCA-CCTCAAATCACAT 66 ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| | Sbjct 1 GTTATTACGTCACACCTCTTCTATAAATTAAGGCTGCGTCTTATCATCC-CAAATCATAC 59 Query 67 AAGTCTCTCTCTTACATTTTGAAACCCTAATTTCTCTTCTTTTCCCCaaaaaaaaaTGTC 126 ||||||||||| | | | | | || | ||| ||| ||||||||||||| Sbjct 60 AAGTCTCTCTC-T-C----T------C--A-TT-T-TTCGAAACCCTAAAAAAAAATGTC 102 Query 127 TGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCA-CCAATGATGAAGATC 185 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| Sbjct 103 AGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAA-GATCAAGATC 161 Query 186 TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCG 245 | ||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||| Sbjct 162 TAGAAAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCG 221 Query 246 AGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 305 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 AGACTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 281 Query 306 ATGCGATTGAAGAGATGAACGGTAAAGAGCTCGATGGACGTGTCATCACCGTGAACGAGG 365 | |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 282 ACGCGATTGAGGAGATGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGG 341 Query 366 CTCAGTCGAGAGGTAGCGGCGGTGGCGGAGGAGGCCGTGGTGGAAGCGGTGGTGGTTACC 425 | ||||| ||||||||||||||||| |||||||||||| || | || |||||||||| Sbjct 342 CACAGTCAAGAGGTAGCGGCGGTGG---AGGAGGCCGTGGAGGCGGTGGAGGTGGTTACC 398 Query 426 GCAGCGGAGGCGGTGGTGGATACTCAGGAGGCGGTGGCGGCGGATACTCAGGAGGAGGCG 485 |||||||||||||||| |||||| |||||| ||||| || ||| || || | | Sbjct 399 GCAGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGT---TACG-AG-AG-ACGTA 452 Query 486 GTGGTGGTTACGAGAGACGTAGCGGAGGTTACGGATCTGGTGGAGGCGGTGGTGGCCGAG 545 |||| ||||||| || | | | ||||| ||| | ||||| | || || || || Sbjct 453 GTGGAGGTTACG-GAT-C-TGGTGGAGG---CGG-T--GGTGGCCGAGGAGGAGG---AG 500 Query 546 GATACGGTGGTGGTGGA---CGCCGTGAGGGAGGTGGCTACGGAGGCGGTGATGGTGGAA 602 |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 501 GATACGGTGGTGGTGGTGGTCGCCGTGAGGGAGGTGGCTACGGAGGAGGTGACGGTGGAA 560 Query 603 GTTACGGAGG---CGGTGGTGGCGGCTGGTAATCAAAGATAGAGTTGTTTGCGTGCTGCT 659 |||||||||| |||||| || ||||||||||||||||| | | | | | | Sbjct 561 GTTACGGAGGAAGCGGTGGAGGTGGCTGGTAATCAAAGAT----T-G----C---C-GAT 607 Query 660 GCTCTGTTTTTGGTTTAGATTTGGTTTTGTGTCACCACTT--CT--GGTTTGGTTATCGT 715 || ||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct 608 -CT--GTTTTTGGTTTAGATTTGGTTTTGTGTCACCGTTTGTCTCTGGTTTGGTTATCGT 664 Query 716 TCGTTTGGTTTACTTTTTTGATGAAACAGTTTCGTTTAA-GTCTTCTTTGTCTGGAACGA 774 |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| Sbjct 665 TCGTTTGGTTTACTTTTTTGATGAAACA-TATCGTTTAAAGTCTTCTTTGTCTGGAACGA 723 Query 775 AATGTTAATTCGCGTGTTGTTTACTAAATTTATAACGTTTCCTTTTAACCAGATTCGAGA 834 ||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| |||| Sbjct 724 AATGTTAATTCGCGTGTTGTTCACTAAATT-ATAAGGTTTCCTCTTAACCAGATTTGAGA 782 Query 835 TTTTCC 840 |||||| Sbjct 783 TTTTCC 788 > Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2 Length=671 Score = 265 bits (143), Expect = 5e-70 Identities = 239/283 (84%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 131 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCAATGATGA-AGA--TCTT 187 ||||||||||||||||| || || || || || ||||||| | |||||| ||| |||| Sbjct 38 GTTGAGTACCGGTGCTTCGTTGGAGGTCTAGCTTGGGCCA-C--TGATGACAGAGCTCTT 94 Query 188 CAAA-GGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCGA 246 ||| | | ||||| || | |||||||||| | ||||| |||||||||||||| || || Sbjct 95 GAAACTG-CCTTCTCTCAATACGGCGACGTTGTTGATTCCAAGATCATTAACGATCGTGA 153 Query 247 GAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGA 306 || ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| Sbjct 154 GACTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAATCCATGAAGGA 213 Query 307 TGCGATTGAAGAGA-TGAACGGTA-AAGAGCTCGATGGACGT-GTCATCACCGTGAACGA 363 ||||||||||| || ||||||| | ||||||||||||||||| | |||||| || ||||| Sbjct 214 TGCGATTGAAG-GAATGAACGG-ACAAGAGCTCGATGGACGTAG-CATCACTGTTAACGA 270 Query 364 GGCTCAGTCGA-GAGGTAGCGGCGGTGGCGGAGGAGGCCGTGG 405 ||||||||| | |||| |||||||| || || || |||||||| Sbjct 271 GGCTCAGTC-ACGAGGAAGCGGCGGCGGAGGCGGCGGCCGTGG 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33281306541 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5