BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39330.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943905 jgi|Araly1|943905|scaffold_700134.1 1895 0.0
Ahg320022 jgi|Araly1|320022|fgenesh1_pm.C_scaffold_4000079 765 0.0
Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1 377 1e-103
> Ahg943905 jgi|Araly1|943905|scaffold_700134.1
Length=1148
Score = 1895 bits (1026), Expect = 0.0
Identities = 1108/1148 (97%), Gaps = 3/1148 (0%)
Strand=Plus/Plus
Query 7 CATAAA-CCCAATCTCTCACTCAGACTAAGACAGAGTCAGAAACAATGGCGAAATCTCCA 65
|||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 CATAAACCCCAATCTCTCACTCAGACAAAGACAGAGACAGAAACAATGGCGAAATCTCCA 60
Query 66 GAAACAGAGCATCCGAACAAAGTCTTTGGTTGGGGTGCTAGAGACAAATCCGGTGTTCTC 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GAAACAGAGCATCCGAACAAAGTCTTTGGTTGGGGTGCTAGAGACAAATCCGGTCTTCTC 120
Query 126 TCTCCTTTTCACTTCTCTAGAAGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCTTTTCACTTCTCTAGAAGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTG 180
Query 186 TTCTGTGGAGTTTGCCACACTGATTTACACACCATCAAAAACGACTGGGGATACTCGTAT 245
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 181 TTTTGTGGAGTTTGCCACACTGATTTACACACCATCAAAAATGACTGGGGATACACGTAT 240
Query 246 TACCCAGTAGTTCCAGGGCATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCCAGTAGTTCCAGGGCATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTG 300
Query 306 ACTAAATTCAAAGAAGGAGATCGTGTCGGAGTAGGAGTGATCAGTGGCTCGTGCCAATCT 365
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |||
Sbjct 301 ACTAAATTCAAAGAAGGAGATCGTGTCGGTGTAGGAGTGATCACTGGTTCGTGCCAGTCT 360
Query 366 TGCGAATCTTGTGACCAAGATCTTGAAAACTACTGTCCTCAAATGTCTTTCACATACAAT 425
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TGCGAATCTTGTGACCAAGATCTTGAAAATTACTGTCCTCAAATGTCTTTCACATACAAT 420
Query 426 GCGATTGGATCCGATGGAACCAAGAATTACGGTGGCTATTCGGAGAACATTGTGGTTGAT 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGATTGGATCCGATGGAACCAAGAATTACGGTGGCTATTCGGAGAACATTGTGGTTGAC 480
Query 486 CAACGGTTTGTTTTGCGGTTTCCGGAGAATTTACCGAGCGATTCGGGTGCGCCGTTGCTG 545
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 CAACGGTTTGTATTGCGGTTTCCCGAGAATTTACCAAGCGATTCGGGTGCGCCGTTGCTG 540
Query 546 TGTGCTGGAATCACTGTGTATAGTCCAATGAAGTATTATGGTATGACTGAGGCAGGGAAG 605
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTGCTGGAATTACTGTGTATAGTCCAATGAAGTATTATGGTATGACTGAGGCAGGGAAG 600
Query 606 CATTTAGGG-GTTGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGC 664
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTT-GGGTGTTGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGC 659
Query 665 TTTTGGTTTGAAAGTTACTGTCATTAGTTCTTCTTCTACGAAAGCAGAGGAAGCCATTAA 724
|||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct 660 TTTTGGGTTGAAAGTTACTGTGATTAGTTCTTCTTCTAAGAAAGAAGAGGAAGCCATTAA 719
Query 725 TCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAAATGAAGGCTGCAAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAAATGAAGGCTGCAAT 779
Query 785 TGGAACAATGGACTACATTATCGATACGATATCAGCAGTACATGCTCTGTATCCGTTGCT 844
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 780 TGGAACAATGGACTACATTATCGACACAATATCAGCAGTACATGCTCTGTATCCGTTGCT 839
Query 845 CGGTTTACTCAAAGTCAACGGAAAGCTCATTGCTTTAGGCTTACCTGAGAAGCCTCTCGA 904
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 840 CGGGTTACTCAAAGTCAACGGAAAGCTCATCGCTTTAGGCTTACCTGAGAAGCCTCTAGA 899
Query 905 GCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTTGGAGGAAGTGACGTGGGAGG 964
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 GCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTGGGAGGAAGTGACGTGGGAGG 959
Query 965 GATGAAGGAGACACAAGAGATGCTTGATTTCTGCGCTAAGCACAACATTACAGCTGATAT 1024
| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GTTGAAGGAGACACAAGAAATGCTTGATTTCTGCGCTAAGCACAACATTACGGCTGATAT 1019
Query 1025 TGAATTGATTAAGATGGATGAGATTAACACTGCGATGGAGAGGCTTGCTAAGTCTGATGT 1084
||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1020 TGAGTTGATTAAGATGGATGAGATTAACTCTGCTATGGAGAGACTTGCTAAGTCTGATGT 1079
Query 1085 TAGGTACAGGTTCGTGATCGACGTGGCTAACTCCTTGAGCCCTCCATGAATGATCCGGAT 1144
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 1080 TAGGTACAGGTTCGTGATCGACGTGGCTAACTCCTTGAGCCCTCCATGACTGGGCCGAAT 1139
Query 1145 CTAAGAAT 1152
||||||||
Sbjct 1140 CTAAGAAT 1147
> Ahg320022 jgi|Araly1|320022|fgenesh1_pm.C_scaffold_4000079
Length=1128
Score = 765 bits (414), Expect = 0.0
Identities = 853/1058 (81%), Gaps = 57/1058 (5%)
Strand=Plus/Plus
Query 90 TTTGGTTGGG-GTGCTAGA-GACAAATCCGGTGTTCTCTCTCCTTTTCACTTCTCTAGAA 147
|||||||||| | || | | ||| |||| || || |||||||| ||||| ||||||||||
Sbjct 22 TTTGGTTGGGCG-GCCA-ACGACGAATCTGGCGTCCTCTCTCCATTTCATTTCTCTAGAA 79
Query 148 GAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTCTGTGGAGTTTGCCACACTG 207
|||| ||| |||| || ||||| |||||||| |||||||||||||| ||||| ||| |||
Sbjct 80 GAGAAAATTGTGAGAACGATGTAACAGTGAAAATCTTGTTCTGTGGTGTTTGTCACTCTG 139
Query 208 AT-TTACACACCATCAAAAACGACTGGGG-ATACTCGT-ATTACCCAGTAGTTCCAGGGC 264
|| || ||||||||||||||| ||||||| || ||| | |||||| || ||||| ||||
Sbjct 140 ATCTT-CACACCATCAAAAACCACTGGGGAAT-CTC-TCGTTACCCCGTTGTTCCCGGGC 196
Query 265 ATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAA-TTCAAAGAAGGA 323
||||||||||||| || |||||||||||||||||||| ||||| ||| || |||||||||
Sbjct 197 ATGAAATCGTTGGAATAGCTACAAAAGTTGGTAAGAATGTGAC-AAAGTTTAAAGAAGGA 255
Query 324 GATCGTGTCGGAGTAGGAGTGATCAGT-GGCTCGTGCCAATCTTGCGAATCTTGTGACCA 382
|| || || |||||||| || || | | || || ||| |||| || ||||| ||| ||||
Sbjct 256 GACCGAGTAGGAGTAGGCGTAAT-AATCGGTTCATGCGAATCATGTGAATCATGTAACCA 314
Query 383 AGATCTT-GAAAACTACTGTCCTCAAAT-GTCTTTCACATACAA-T-GCGATTGGATCCG 438
||| ||| |||||||| |||||| || | || ||| |||||||| | || || || |
Sbjct 315 AGA-CTTAGAAAACTATTGTCCTGAAGTCGT-TTTTACATACAACTCTCG-TT-CCTCTG 370
Query 439 ATGGAACCAAG-AATTACGGTGGCTATTCGGA-GAACATTGTGGTTGATCAACGGTTTGT 496
| |||||| || || | ||||| ||||| || | | ||||| || ||||| || |||||
Sbjct 371 ACGGAACC-AGAAACCAAGGTGGTTATTCCGACGTA-ATTGTTGTCGATCACCGCTTTGT 428
Query 497 TTTGCGGTTTCCGGA-GAATTTACCGAGCGATTCGGGTGCGCCGTTGCTGTGTGCTGGAA 555
| | |||| || | |||||| |||||| | | |||||| |||| ||||||||||
Sbjct 429 CCTAAGCATTCCCGATG-GTTTACCAAGCGATGCAGCCGCGCCGCTGCTCTGTGCTGGAA 487
Query 556 TCACTGTGTATAGTCCAATGAAGTATTATGGTATGACTG-AG--GCAGGGAAGCATTTAG 612
| |||||||| ||||||||||| |||||||||||||||| || ||||||| |||||||
Sbjct 488 TTACTGTGTACAGTCCAATGAAATATTATGGTATGACTGAAGAATCAGGGAAACATTTAG 547
Query 613 GGGTTG-CTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTTTGGT 671
| | || |||||||||||| ||||||||| | ||||| |||||||||||||| ||||||
Sbjct 548 GTG-TGAATGGACTTGGTGGACTTGGTCATATCGCTGTGAAGATTGGTAAAGCCTTTGGT 606
Query 672 TTGAA-AGTTACTGTCATTAGTTCTTCTTCTA-CGAAAGCAGA-GGAAGCCATTAATC-A 727
|| || ||||||||| || ||| || || | ||||| ||| |||||| ||| ||| |
Sbjct 607 TT-AAGAGTTACTGTGATGAGTAGGTCATC-AGAGAAAG-AGAGGGAAGCTATTGATCGA 663
Query 728 TCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAA-ATGAAGGCTGCAATTG 786
|| |||||||||||||||||||| ||||| ||| |||| ||| ||||||| ||||| |
Sbjct 664 -CTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCA-AAAGATGAAGGATGCAACAG 721
Query 787 GAACAATGGACTACATTATCGATA-CGATATCAGCAGTACATGCTCT-GTATCCGTTGCT 844
|||| ||||| | | ||||||||| || ||||||||| ||||||||| || |||||| |
Sbjct 722 GAACTATGGATTTCGTTATCGATACCG-TATCAGCAGAACATGCTCTATTA-CCGTTGTT 779
Query 845 CGGTTTACTCAAAGTCAACGGAAAGCTCAT-TG-CTTTAGGCTTACCTGAGAAGCCTCTC 902
|||| || ||||| | |||||||| | || ||||||||||||| |||||| | |||
Sbjct 780 TAGTTTGCTTAAAGTGAGTGGAAAGCT--TGTGACTTTAGGCTTACCGGAGAAGTCACTC 837
Query 903 GAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTTGGAGGAAGTGACG-TGGG 961
||||||||||| |||||||| |||||||||||||||||||| ||||||||| | | | ||
Sbjct 838 GAGCTACCAATCTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCA-GATTGG 896
Query 962 AGGGATGAAGGAGACACAAGAGATGCTTGATTTCTGCGCTAAGCACAACATTACAGCTGA 1021
|||||||||||||||||||||||||||||| ||||| || ||||| || || | ||
Sbjct 897 AGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAATATCGTTTCGGA 956
Query 1022 TATTGAATTGATTAAGATG-GATGAGATTAACACTGCGATGGAGAGGCTTG-CTAAGTCT 1079
|||||| | || |||||| | ||| || ||| |||||||||| | ||| |||| |||
Sbjct 957 TATTGAGCTCATAAAGATGAG-TGATATCAACTCTGCGATGGACCGT-TTGGCTAAATCT 1014
Query 1080 GATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTC 1117
||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1015 GATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTC 1052
> Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1
Length=384
Score = 377 bits (204), Expect = 1e-103
Identities = 234/249 (94%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 1490 TCAAACTATTTTGGGAGACGGAGCCGGAGAAGAGTCGCCGGAGTTTGGATTCTGACAAAA 1549
|||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 384 TCAAGCTATTTTGGGAGAAGGAGAAGGAGAAGAGTCGTCGGAGTTTGGATTCTGACAAAA 325
Query 1550 GCCACGAAGGACATTAGCTTCCTCAGGCGTAAATCCGAGAGAAGTGAGCATCGCCGGCCA 1609
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 GCCACGAAGGACATTGGCTTCCTCAGGCGTAAATCCGAGAGAAGTGAGCATTGCCGGCCA 265
Query 1610 GCAATTGGTGGTGATGATGTCTACGGATTCGCAACAACTAACACCAAGTTTTGTTTCACC 1669
|||||||| |||||||| || |||| ||||||||||||||| |||||||||||||||||
Sbjct 264 ACAATTGGTAGTGATGATATCGACGGCTTCGCAACAACTAACGCCAAGTTTTGTTTCACC 205
Query 1670 GTTGAGGAAGAAGAGAACGATCTCGTTGGTGCATGATTTCAGCTCGTATAATGCGTTCCA 1729
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 204 GTTGAGGAAGAAGAGAACGATCTCATTGGTGCACGATTTCAGCTCGTATAATGCGTTCCA 145
Query 1730 GCATTCCAT 1738
|||||||||
Sbjct 144 GCATTCCAT 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5