BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39460.1 Length=1188 Score E Sequences producing significant alignments: (Bits) Value Ahg888153 jgi|Araly1|888153|Al_scaffold_0007_139 1635 0.0 Ahg888319 jgi|Araly1|888319|Al_scaffold_0007_305 457 1e-127 Ahg903863 jgi|Araly1|903863|Al_scaffold_0003_991 453 1e-126 > Ahg888153 jgi|Araly1|888153|Al_scaffold_0007_139 Length=978 Score = 1635 bits (885), Expect = 0.0 Identities = 947/978 (97%), Gaps = 0/978 (0%) Strand=Plus/Plus Query 111 ATGGCTCCTCTTACTCTCTCCGTTGATGTGAAGAGCTCTTCAGCGACCTCTCATGATGTT 170 |||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||| Sbjct 1 ATGGCTCCTCTTACTCTCTCTGTTGATGTGAAGAGCTCTTCAGCCACTTCTCCTGATGTT 60 Query 171 TCGAAGAGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTT 230 || |||||||||||||| ||| ||||||||||||| | | |||||||||||||||||||| Sbjct 61 TCCAAGAGGGTAATGCACAGTCCACAGCTCAAAATGAGCCAAGGCTTTTTTGCATCTGTT 120 Query 231 AATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGGTTTATAGCA 290 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 AATACGCAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGATTTATAGCA 180 Query 291 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 240 Query 351 AGACTTCAGGCAGCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 410 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 AGACTTCAGGCAGCTCGTGGAGGTGGGAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 300 Query 411 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTATGAACCC 360 Query 471 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACT 530 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACA 420 Query 531 GCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 590 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 GCAGGGGCCATCGGTGGACTTGCTGCCTCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 480 Query 591 CAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCA 650 || ||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||| Sbjct 481 CAGAGAATGCAGACCGGACAGTTTACATCAGCCCCCAATGCTGTTCGACTTATTGCATCA 540 Query 651 AAAGAGGGATTTAGGGGTCTCTATGCAGGATACCGGTCCTTCCTTTTGCGAGATTTGCCA 710 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 541 AAAGAGGGATTTAGGGGTCTTTATGCAGGATATCGGTCCTTCCTTTTGCGAGATTTGCCG 600 Query 711 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCGCG 770 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 601 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTATGCTTGGGGTATAAAAAAGCAGCG 660 Query 771 CGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGGTGCTCTGACC 830 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 CGTAGAGACCTTAGTGATCCTGAGAACGCTCTAATCGGTGCCTTTGCTGGTGCTCTGACC 720 Query 831 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 780 Query 891 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 840 Query 951 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTC 1010 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGTTCAATCTTC 900 Query 1011 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTTAAA 1070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 901 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTCAAA 960 Query 1071 GAAACCAAAGAAGAATAA 1088 ||||||||||| |||||| Sbjct 961 GAAACCAAAGAGGAATAA 978 > Ahg888319 jgi|Araly1|888319|Al_scaffold_0007_305 Length=270 Score = 457 bits (247), Expect = 1e-127 Identities = 255/259 (98%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 821 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 71 Query 881 GGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGA 940 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 72 GGGATCAGCCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGA 131 Query 941 AGGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 1000 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 AGGAGTTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 191 Query 1001 ATCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 1060 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 TTCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 251 Query 1061 TACGGTTAAAGAAACCAAA 1079 ||||||||||||||||||| Sbjct 252 TACGGTTAAAGAAACCAAA 270 > Ahg903863 jgi|Araly1|903863|Al_scaffold_0003_991 Length=261 Score = 453 bits (245), Expect = 1e-126 Identities = 255/260 (98%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 822 GCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 881 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTCTGACCGGAGTAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 60 Query 882 GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAA 941 |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 61 GGATCAACCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGAA 120 Query 942 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGA 1001 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGT 180 Query 1002 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 1061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 240 Query 1062 ACGGTTAAAGAAACCAAAGA 1081 |||||||||||||||||||| Sbjct 241 ACGGTTAAAGAAACCAAAGA 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44336952471 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5