BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39520.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943928 jgi|Araly1|943928|scaffold_700157.1 2067 0.0
> Ahg943928 jgi|Araly1|943928|scaffold_700157.1
Length=1215
Score = 2067 bits (1119), Expect = 0.0
Identities = 1183/1215 (97%), Gaps = 0/1215 (0%)
Strand=Plus/Plus
Query 120 TCCGGTGTCCTTCTTCCTTTCACTCGCGTATAACCTCTTTTCCTTGACGTTGTCTCCGTG 179
||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 1 TCCGGTGTCCTTCTTCCTTTCACTCGCGTTTAACCTCTTTGCCTTGACGTTGTCCCCGTG 60
Query 180 AGCTCTCTGTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCTCTCTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 120
Query 240 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 180
Query 300 GGCCAAGCTTGCTAAGCTTCGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 359
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCCAAACTTGCTAAGCTACGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 240
Query 360 TGGTGCTGGAGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGG 419
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 241 TGGTGCTGGTGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTTGTTGG 300
Query 420 ATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGGT 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 301 GTTTCCTTCGGTTGGAAAATCTACGCTATTGAACAAGCTGACTGGGACATTTTCTGAGGT 360
Query 480 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGC 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATTACATATCGTGGAGC 420
Query 540 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAG 599
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 421 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGCGCTAAAGACGGAAAAGGTAG 480
Query 600 AGGAAGACAGGTTATAAGTACGGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGAAGACAGGTTATAAGTACTGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 540
Query 660 CATAAAACCAATTACTCACAAGCGTCTCATTGAAAAAGAGCTCGAAGGATTCGGAATAAG 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 CATAAAACCAATTACTCACAAGCGTCTCATTGAGAAAGAGCTCGAAGGATTCGGAATAAG 600
Query 720 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 660
Query 780 AACTTCTACAGTCGCTGTCACACACCTTGACCTTGACACCGTCAAGGCGATTTGCGGTGA 839
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 661 AACTTCTACAGTCGCTGTCACACACCTTGACCTCGACACGGTCAAGGCGATTTGCGGTGA 720
Query 840 GTACAGGATGCACAATGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 899
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTACAGGATTCACAACGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 780
Query 900 TGATGTCATCGAGGGCAGTCGGATTTATATGCCCTGTATCTATGCTGTCAACAAGATCGA 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 TGATGTCATCGAGGGCAGTCGGATATATATGCCCTGTATCTATGCTGTCAACAAGATCGA 840
Query 960 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 900
Query 1020 TGCGCATCTGGAGTGGAATCTTGATGGACTTCTGGACAAGATATGGGAATACTTGGATCT 1079
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 901 TGCGCATCTGGAGTGGAATCTTGACGGTCTTCTGGACAAGATATGGGAATACTTGGATCT 960
Query 1080 AACTCGAATCTACACAAAACCAAAGGCAATGAATCCGGATTATGATGATCCCGTAATCTT 1139
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 961 AACTCGAATCTACACAAAACCGAAGGCAATGAATCCGGATTATGATGATCCCGTTATCTT 1020
Query 1140 ATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCTTCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1080
Query 1200 ACAATTCAAGTACGCTCTGGTTTGGGGTTCAAGTGCCAAACACAAGCCACAAAGAGTTGG 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 ACAATTCAAGTACGCTCTGGTTTGGGGTTCGAGTGCCAAACACAAGCCACAAAGAGTTGG 1140
Query 1260 AAAGGAACACGAGCTTGAGGACGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTTTT 1319
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 AAAGGAACACGAGCTCGAGGATGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTATT 1200
Query 1320 GCAGATAATGGAGAG 1334
||||||||||||||
Sbjct 1201 CCAGATAATGGAGAG 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5