BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39680.1

Length=2466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943964 jgi|Araly1|943964|scaffold_700193.1                       2874    0.0  


> Ahg943964 jgi|Araly1|943964|scaffold_700193.1
Length=1960

 Score = 2874 bits (1556),  Expect = 0.0
 Identities = 1837/1964 (94%), Gaps = 54/1964 (3%)
 Strand=Plus/Plus

Query  252   CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT  311
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  6     CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT  65

Query  312   AAGTGGAAGGTTACGGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC  371
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  66    AAGTGGAAGGTTACAGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC  125

Query  372   TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGCTGAGCAAGAAGAGTCT  431
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  126   TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGTTGAGCAAGAAGAGTCT  185

Query  432   GAAAGGATCAATAGTGCTACTGTTGCTGCTGCTGAAAAAGCCAATCAAGAGCCTCAGATG  491
             ||||| ||| | |   | |  | |||||||||||| ||||||||||||||| |||| |||
Sbjct  186   GAAAGAATC-A-A---C-A--G-TGCTGCTGCTGAGAAAGCCAATCAAGAGGCTCATATG  236

Query  492   TTTCCTGTTACT---------GT--A-GGT------GATCGTAATCAAACCACTCCTGTT  533
             ||||||||||||         ||  | | |      ||||||||||||||||||||||||
Sbjct  237   TTTCCTGTTACTGGAGGCGACGTCAATGTTACACCAGATCGTAATCAAACCACTCCTGTT  296

Query  534   ACTCCTGTTGAAGCGGCATTTAGCACTGAGACAACTCCTGTTACAGCTGAGAAAACCCCA  593
             |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  297   ACTCCTGTTGAAGCAGCATTTAGCACTGAGACAACTCCTGTTGCAGCTGAGAAAACCCCA  356

Query  594   GAACCAACTCAGACCAAGATAACAACTGAAGCTTCAGCTGGTGTTGAGACTACACCAGCC  653
             ||||||| |||| | |||| ||||||||||||||||||||||||||| || |||||| ||
Sbjct  357   GAACCAATTCAGGCTAAGACAACAACTGAAGCTTCAGCTGGTGTTGAAACAACACCAACC  416

Query  654   CCGGTGTTTTCAGAACCAGAGGTTAACGCTGTGCCATTCGCTAGTGATGAAGATGAGAAA  713
             || || |||||| |||||||||||||| | |||||||||||||||||||||| |      
Sbjct  417   CCAGTATTTTCAAAACCAGAGGTTAACCCGGTGCCATTCGCTAGTGATGAAG-T-----T  470

Query  714   GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCACGTGAT  773
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  471   GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCATGTGAT  530

Query  774   GCAGCAGTTGTGCAAGTGGCGTCTAGTGAGCACAAATCTGAGAATAATGAACCATTTAGT  833
             |||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  531   GCAGCAGTTGTGGACGTGGCCTCTAGTGAGCACAAATCTGAGAATAAGGAACCATTTAGT  590

Query  834   GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT  893
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591   GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT  650

Query  894   ATGTACAACCAGGTATCTGAGGTCATCCCCGTTACAGGGTTTGAGGTAAAATCTGATTGT  953
             ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  651   ATGAACAACCAGGTATCTGAGGTCATCCCCATTACAGGGTTTGAGGTAAAATCTGATTGT  710

Query  954   ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT  1013
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711   ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT  770

Query  1014  GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC  1073
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  771   GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC  830

Query  1074  GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGACATCTGTTGGAGGTGGG  1133
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  831   GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGAAATCTGTTGGAGGTGGA  890

Query  1134  GATGACAGCAATGCTGCAAACGCAGATATGATCAAAGAAAATAATATTATCGATGCAGGC  1193
             |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct  891   GATGACAGCAATGCTGCAAATGCAGATATGACCAAAGAAAATAATATTATCGATGCAGGC  950

Query  1194  GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCG  1253
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  951   GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCA  1010

Query  1254  GAGACAAAGCAATCCGAGTCAATTACATCTGATGATAAGAGTGCA-AAAATTGAAATGCT  1312
             |||||||||||| | |||||||||||||||| ||||||||||| | ||||||||||  ||
Sbjct  1011  GAGACAAAGCAAACTGAGTCAATTACATCTGTTGATAAGAGTG-AGAAAATTGAAACCCT  1069

Query  1313  TTCTAAGGAGGAAAGCCGTGCTGATATGGATGCGGGGAAAGGGAAATCCCCTGAAAATAA  1372
             |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct  1070  TTCTAAGGAGGAAAGCCGTGCTGATAGGGATGCTGGGAAAGGGAAAGCCCCTGAAAATAA  1129

Query  1373  AAGTCACCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT  1432
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1130  AAGTCATCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT  1189

Query  1433  TGGAAACAATGAACCTGCAAAGAGGC---GCCGATGGAACTCT-AATAGTATTAAAGTTC  1488
             |||||||||||| |||||||||||||   |||||||||||||| || |||||||||||||
Sbjct  1190  TGGAAACAATGAGCCTGCAAAGAGGCAACGCCGATGGAACTCTGAA-AGTATTAAAGTTC  1248

Query  1489  CTGAAGCACAGATCACTAATAGTGCTACACCCACTACAACACCAAGGTCGACTGGTCTGA  1548
             |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1249  CTGAAGCACAGACCACGAATAGTGCTACACCCACTACAACACCAAGGTCGACCGGTCTGA  1308

Query  1549  AGCGCGACTTCTCAAGGTCTGACTCTTCGGTTAGTGAAGATGGACCCAAGGAACGTGTGG  1608
             |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  1309  AGCGCGACTTCTCAAGATCTGACTCTTCGGTTAGTGAGGATGGACCCAAGGAACGCGTGG  1368

Query  1609  TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGACCGTTTCCTTAGGCCGT  1668
             ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  1369  TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGATCGTTTCCTAAGGCCGT  1428

Query  1669  TCACACTGAAAGCTGTTCAGGAGCTCCTGGGTAAAACCGGAAATGTCACTAGTTTCTGGA  1728
             |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct  1429  TCACACTGAAAGCTGTTCAGGAACTCCTGGGTAAAACCGGAAACGTCACTAGTTTCTGGA  1488

Query  1729  TGGACCACATTAAGACCCACTGCTATGTATCGTATCCCTCGGTTGAAGAAGCAGCAGCAA  1788
             ||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||
Sbjct  1489  TGGACCACATTAAGACCCATTGCTATGTATCATATCCCTCTGTTGAAGAAGCTGCAGCAA  1548

Query  1789  CAAGAGAAGCAGTGTATAACCTCCAGTGGCCACCTAATGGAGGCCGCCATCTGATAGCTG  1848
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1549  CAAGAGAAGCAGTGTATAACCTCCAATGGCCACCTAATGGAGGCCGCCATCTGATAGCTG  1608

Query  1849  AATTTGTTAGAGCAGAAGAAGTAAAAGAAAAACTGGAAGCTCCTCTGCCTCCTC------  1902
             ||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||      
Sbjct  1609  AATTTGTCAGACCAGAAGAAGTAAAAGCAAAACTGGAAGCTCCTCTACCTCCTCCTCCTC  1668

Query  1903  AGCCTCAGCATCAGC--CA-C-A-A-GCTCAGACTCTTTCGCGGCCACCTCCAACTGCTC  1956
             |||||||||||||||  || | | | ||||||||||||||||||||||||||||| ||||
Sbjct  1669  AGCCTCAGCATCAGCATCAGCCACAAGCTCAGACTCTTTCGCGGCCACCTCCAACCGCTC  1728

Query  1957  TTCCACCACCACCACCTCTGGCCAAACCACCTCAC-GTTGTAGAACGTCTTCCTCTGCCT  2015
             ||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||
Sbjct  1729  TTCCACCACCACCACCTCTGGCCAAACCACCTC-CTGTCGTAGAACGTCTTCCTCTTCCT  1787

Query  2016  CCCCCTCCTCCTATAGCCCCTGAGGAACAAGAACCTCCCATTGTCACTCTTGATGATCTA  2075
             |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||| 
Sbjct  1788  CCCCCTCCTCCTCTAGTCTCTGAGGAGCAAGAACCTCCCATTGTCACTCTTGATGATCTT  1847

Query  2076  TTCAAGAAGACAAAAGCGATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT  2135
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1848  TTCAAGAAGACAAAAGCAATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT  1907

Query  2136  GCAGCTAAACTTGCAGCGAATAATAACAAGTGATCTTGCTGGTT  2179
             ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1908  GCAGCTAAACTTGCAGCTAATAATAACAAGTGATCTTGCTGGTT  1951



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 92940197800


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5