BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39690.1 Length=2390 Score E Sequences producing significant alignments: (Bits) Value Ahg490751 jgi|Araly1|490751|fgenesh2_kg.7__184__AT4G39690.1 3184 0.0 > Ahg490751 jgi|Araly1|490751|fgenesh2_kg.7__184__AT4G39690.1 Length=2370 Score = 3184 bits (1724), Expect = 0.0 Identities = 2019/2155 (94%), Gaps = 45/2155 (2%) Strand=Plus/Plus Query 7 TTTTACTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCG-TAACA--TCTTCGCTCTCTC 63 |||| |||||||||||||||||||||||||||||||||| ||||| | |||||||| || Sbjct 1 TTTTGCTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCGTTAACATTTGTTCGCTCTATC 60 Query 64 GTTCGGCG-TTTGTATCACCAGA-GACGCGACGCGATAATGCTTCGGAAGTCGGTTCTCG 121 |||||||| ||| | |||| ||| || || |||||||||||||||||||||||||||||| Sbjct 61 GTTCGGCGTTTTCT-TCACGAGAGGA-GCAACGCGATAATGCTTCGGAAGTCGGTTCTCG 118 Query 122 AGCTGTCTTCTCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AGCTGTCTTCGCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 178 Query 182 ATTTGAGCTCTTCGAGAAATGCATCTACATCTGGTAAAAATGGTCTCCCTGGAGCTAAAC 241 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 179 ATTTGAGTTCTTCGAGAAATGCATCTACATCTGGTAAGAATGGTCTTCCTGGAGCTAAAC 238 Query 242 CCGTTGGGAAACCAGATGCCTCAAAAGTTGATCCTCCAAAAGTGA---CTCCT---CCTC 295 ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct 239 CCGTTGGGAAACCAGATGCCTCAAAGGTTGATCCTCCAAAAGTGACTTCTCCTCCACCTC 298 Query 296 C--T-------CC---T--A-CTAAAGGAAATTCTTCAAAAGTGGTTATAGGAGGTGTTG 340 | | || | | |||||||||||||||||||||||||| |||||||| ||| Sbjct 299 CTGTGGGGAAACCAAGTGAATCTAAAGGAAATTCTTCAAAAGTGGTTGTAGGAGGTCTTG 358 Query 341 CAATCGCTGGGGCTTTTCTGGTAGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 400 | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 CGATCGCTGGTGCTTTTCTGGTTGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 418 Query 401 AAGAACAGCAGAAATTAAGTGAGCGAATTCATTCTGATGCTCTAACTGA-AAAGCTGGAG 459 ||||||||||||||||||| ||||||||||||||||||||| | ||| | |||| ||||| Sbjct 419 AAGAACAGCAGAAATTAAGCGAGCGAATTCATTCTGATGCTGTTACTAACAAAG-TGGAG 477 Query 460 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAAGATGGAAAA 519 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 478 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAGGATGGTCAA 537 Query 520 GTTGAAACGCAACCTCAAGTTACTCATTCTGAAGCTTCCGAGGGAGTGCAGAGTGACATA 579 ||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||| Sbjct 538 GTTGAAACGCAACCTGAAGTTACTCATTCTGAAGCTTCTGGGGGAATGCAGAGTGACATA 597 Query 580 GAACTGCAACCCGAGTCTGATCTATCATCTGACCGTTTTACATATATTTCTTCTAACCAA 639 ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 598 GAAGTGCAACCCGAGTCTGATCTATCATCTGAACGTTTTACATATATTTCTTCGAACCAA 657 Query 640 GAGGAG---ACACCTCAAGAAACTGTCATTGATAGAGCAGAGATAAACTTGCCTATTTCT 696 |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 658 GAGGAGACCACACCTCAAGAAAGTGTCATTGATAGAGCAGAGAGAAACTTGCCTATTTCT 717 Query 697 GCATCTGAAGATTCAGGAGCTAAGCCGGACATGCCATCAGAAATTATTTCTGAGGCAGAA 756 | |||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 718 GAATCTGAAGATTCGGGAGTTAAGTCGGACATGCCCTCAGAAATTATTTCTGAGGCAGAA 777 Query 757 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGATAGTCCTATTATTGTTAATGCCCAG 816 ||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||| Sbjct 778 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGACAGT--T-CTATTGTTAGTGCCCAG 834 Query 817 TCTAGTTCGGTTCATAGAGAAAGCGAAACGGAATCTGCTTCACCAAAGGATCCTGCCGCT 876 |||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||||| Sbjct 835 TCTAGTTCGGCTCATAGAGAAAGTGAAACGGAATCTGCTACACCAAAGGATCCTTCCGCT 894 Query 877 CTAAAGACACCTGAGGATGGCATTGAGCGGGAAGTACAATTACCAGGTTCTCTCCTTAAG 936 |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 895 GAAAAGGCACATGAGGATGGCATTGAGCGGGAAGTACAAATACCAGGTTCTCTCCTTAAG 954 Query 937 GAATATAATCTAGAAGGCAGTGATACTGAAAGCACTGGGTCCTCGTCAATAGGGGAGCAA 996 ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 955 GAATACAATCTAGAAGGCAGTGATACTGAAAGCACTGGATCCCCGTCAATAGGGGAGCAA 1014 Query 997 ATAACTAAAGAAACTGAGGCCT-TTCCTAACTCAACCGAGGGGCTGAAAGATAGTTACAT 1055 | |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct 1015 CTGACTAAAGAAACTGAGG-CTCTTCCTAACTCAACCGAGGGGCTGAAAGATGGTTACAT 1073 Query 1056 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1133 Query 1116 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1193 Query 1176 TGAAAATGAGTTAAGAGACCTTAGGGCACGTGAGCTAATGCGTATAGAGGAGGCAGCAAT 1235 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1194 TGAAAATGAGTTGAGAGACCTTAGGGCACGTGAGCTAATGCGAATAGAAGAGGCAGCAAT 1253 Query 1236 ATTGGATAAGGAGCTAAAAAGAGAACGAACAAAAGCAGCAGCTGCTATTAAAGCAATCCA 1295 ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct 1254 ATTGGATAAGGAGCTAAAAAGAGAAAGAACAAAAGCAGCCGCTGCTATCAAAGCAATCCA 1313 Query 1296 GGAGAGAATGGAAGATAAGCTCAAAGCTGAACTTGAACAAAAGGAAACTGAAGCGCAGTT 1355 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1314 GGAGAGAATGGAAGATAAGCTCAAAACTGAAATTGAACAAAAGGAAACTGAAGCGCAGTT 1373 Query 1356 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTTCG-ACAATTGCAAAAG 1414 ||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1374 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTGCGGA-AATTGCAAAAG 1432 Query 1415 AAAAGGCAGCACAGATTGAAAAAATGGCAGAGGCAGATCTTAATATAAAGGCACTGAGTA 1474 ||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 1433 AAAAGGCAGCACAAATTGAAAAGATGGCAGAGGCAGATAGCAATATAAAGGCGCTGAGTA 1492 Query 1475 TGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1534 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 TGGCGTTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1552 Query 1535 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAGTCCAAAAAGAAATCG 1594 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1553 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAATCCAAAAAGAAATCA 1612 Query 1595 ATACGCTTCAGACTTATCTTGAAGGGACTCATAAAGATTCAATCCTAGGCCTGGTATTAT 1654 ||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| Sbjct 1613 ATATGCTTCAGACTTATCTTGAAGGGACTCAGAAGGATTCAATCCTAGGCTTGGTATTAT 1672 Query 1655 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1732 Query 1715 AGTTTGATACCTTGAAAGGAACACTTAGACATTTCAGTCTCATTCCACCTGGTGGCGGAG 1774 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1733 AGTTTGATACCTTGAAAGGAACACTTAGACACTTCAGTCTCATTCCACCTGGTGGCGGAG 1792 Query 1775 GCATCTTAGCACATTCCCTAGCACATGTAGCATCTTCGCTAAAGTTTAAAGAAGTGGATC 1834 | ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| Sbjct 1793 GAATCTTAGCACATTCCCTAGCACAAGTAGCATCTTGGCTAAAGTTCAAAGAAGTGGATC 1852 Query 1835 AAGCTAATGGAGGCATCGAATCTGTAATTAAAAAGGTGGATAATTACTTGGCGGAAGGAA 1894 | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1853 ACGCAAATGGAGGCATCGAATCTGTAATTAAAAAGGTTGATAATTACTTGGCGGAAGGAA 1912 Query 1895 AACTAGCAGAAGCAGCAGCAACACTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1954 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1913 AACTAGCAGAAGCAGCAGCTGCGCTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1972 Query 1955 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1973 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2032 Query 2015 TTCTCCAATCTTATGCAACTTGTGTTAGCCTCACTTGAATCCCTTCCAGATCTTCCATTG 2074 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 2033 TTCTCCAATCTTATGCAACTTGTGTCAGCCTCACTTGAATCCCTCCCAGATCTTCCATTG 2092 Query 2075 AGGTACATTGCTTCTTCttttt-tttt--AATTCGATACTGAGATTCCTGGAGTT 2126 ||||||||||||| || ||||| |||| |||||||||| ||||||||||||||| Sbjct 2093 AGGTACATTGCTT-TT-TTTTTATTTTGGAATTCGATACAGAGATTCCTGGAGTT 2145 Score = 283 bits (153), Expect = 4e-75 Identities = 206/231 (89%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 2159 TTTTTCTGGTGAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTTTGAATCACA 2218 ||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2145 TTTTTTTGGTCAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTCTAAATCACA 2204 Query 2219 GCTGTTCATGTTATCTGAATTAGAATGTTACCAGAAAGTTTGA-TACAAAAATAAGATCG 2277 |||||| ||||||||||| ||||||||||| || ||||||||| | |||||||||||| | Sbjct 2205 GCTGTTGATGTTATCTGAGTTAGAATGTTAACA-AAAGTTTGAAT-CAAAAATAAGATTG 2262 Query 2278 AATCTCACGAATTTATGATATTTGTCTGGAATGGGATCAGGAGATGTTGATTTGGTGATG 2337 ||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| Sbjct 2263 AATCTCACGAATTTATGATTTTTGTCTACATTGGGATCAGAAGATGTTGATTTGGTGATT 2322 Query 2338 AATGTTGTTGCTGTACTGATGTGGCATCATGTGGTATATCACTGGGCTTAT 2388 | |||||||| | | |||||||||||||| |||| ||||||| ||||||| Sbjct 2323 ATTGTTGTTG-T--AGTGATGTGGCATCATATGGTGTATCACTAGGCTTAT 2370 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90045339180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5