BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39730.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1 1040 0.0
Ahg932181 jgi|Araly1|932181|scaffold_400169.1 416 1e-115
> Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1
Length=656
Score = 1040 bits (563), Expect = 0.0
Identities = 628/659 (95%), Gaps = 6/659 (1%)
Strand=Plus/Plus
Query 20 aaaatacaaatcgttcaccggaaaaaaacaaaatGGCTCGTCGCGATGTTCTCCTCCCTT 79
|||| ||||||||||||||||||| ||| ||||||||| ||||| ||| |||||||||
Sbjct 1 AAAA-ACAAATCGTTCACCGGAAACCCACAGAATGGCTCGCCGCGACGTTGTCCTCCCTT 59
Query 80 TCCTCCTCCTTCTCGCCACCGTCTCCGCCGTAGCTTTCGCCGAAGATGATCCAGACTGTG 139
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 TCCTCCTCCTTCTCGCCACCGTCTCCGCCGTAGCTTTCGCCGAAGACGATCCAGACTGTG 119
Query 140 TATACACATTCTACCTCAGAACCGGATCGATCTGGAAAGCCGGAACCGATTCGATCATCA 199
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTACACATTCTACCTAAGAACCGGATCGATCTGGAAAGCCGGAACCGATTCGATCATCA 179
Query 200 GCGCAAGAATCTACGATAAGGACGGTGACTACATCGGAATCAAAAACCTTCAAGCTTGGG 259
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCGCAAGAGTCTACGATAAGTACGGTGACTACATCGGAATCAAAAACCTTCAAGCTTGGG 239
Query 260 CTGGATTAATGGGACCTGATTACAATTACTTCGAGAGGGGTAATCTCGACATTTTCAGTG 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGGATTAATGGGACCTGATTACAATTACTTCGAGAGGGGTAATCTCGACATTTTCAGTG 299
Query 320 GAAGAGCACCGTGTTTACCTAGTCCGATCTGTGCCTTAAACCTAACCTCCGATGGCTCCG 379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GAAGAGCACCGTGTTTACCTAGTCCGATCTGTGCCTTAAACCTAACCTCTGATGGCTCCG 359
Query 380 GCGATCACCATGGTTGGTACGTTAATTACGTTGAGATCACGACGGCTGGTGTTCACGCAC 439
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 360 GTGATCACCATGGTTGGTACGCTAATTACGTTGAGGTCACGACGGCTGGTGTTCACGCAC 419
Query 440 AGTGCTCGACGCAGGATTTTGAGATTGAGCAATGGCTCGCTACTGATACTTCTCCTTATG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGTGCTCGACGCAGGATTTTGAGATTGAGCAATGGCTCGCTACTGATACTTCTCCTTATG 479
Query 500 AGCTCACCGCCGTACGGAACAATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCG 559
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCTCACCGCCGTTCGTAACAATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCG 539
Query 560 GGTCTGAGATTCGGAAAAAGCTTTCTTGGGTCGTTTAAGTGATGTGT-TGTGATTCGTGA 618
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 540 GGTCTGAGATCCGGAAAAAGCTTTCTTGGGTCGTTTAAGTGATGTGTAT-TGATTCGTGA 598
Query 619 GACTTGTCTGTATTGTTTGTATTCTCGTTGT--TCTTGTGAGTGTAATGTGGCGTTAAT 675
|| | |||||||||||||| || |||| || ||||||||||||||||||||||||||
Sbjct 599 GAGTC-TCTGTATTGTTTGTTTTGTCGTCGTCGTCTTGTGAGTGTAATGTGGCGTTAAT 656
> Ahg932181 jgi|Araly1|932181|scaffold_400169.1
Length=593
Score = 416 bits (225), Expect = 1e-115
Identities = 448/554 (81%), Gaps = 21/554 (4%)
Strand=Plus/Plus
Query 52 atGGCTCGTCGCGATGTTCTCCTCCCT-TTCCTCCTCCT--TC-TCGCCACCGTCTCCGC 107
||| |||| || || ||||| || ||| | ||||||||| || ||||||||||||||||
Sbjct 25 ATGCCTCGCCGTGACGTTCT-CTTCCTCTCCCTCCTCCTCGTCATCGCCACCGTCTCCGC 83
Query 108 CGTAGCTTTCGCCGAAGATGATCCAGACTGTGTATACACATTCTACCTCAGAACCGGATC 167
||| || |||||||| ||||| |||| ||||| |||||||||||||| |||||||||||
Sbjct 84 CGTCGCATTCGCCGACGATGAAGCAGATTGTGTCTACACATTCTACCTTAGAACCGGATC 143
Query 168 GATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAATCTACGATAAGGACGGTGA 227
|||| |||||||| || ||||||||||| ||||| ||| ||||||| || |||| ||
Sbjct 144 AATCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGA 203
Query 228 CTACATCGGAATCAAAAACCTTCAAGCTTGGGCTGGATTAATGGGACCTGATTACAATTA 287
||||||||| ||| |||||| |||| |||| ||| ||||||||||| | |||||| ||
Sbjct 204 CTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTA 263
Query 288 CTTCGAGAGGGGTAATCTCGACATTTTCAGTGG-AAGAGCACCGTGT-TTACCTAGTCC- 344
|| |||||||||||||||||||||||||||||| || |||||||||| || || || ||
Sbjct 264 CTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAA-AGCACCGTGTCTT-CCGAGCCCA 321
Query 345 GATCTGTGCCTTAAACCTAACCTCCGATGGCTCCGGCGATCACCATGGTTGGTACGTTAA 404
| ||||| | || || || ||||| || |||||||| || ||||| |||||||| |||||
Sbjct 322 G-TCTGTTCATTGAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAA 380
Query 405 TTACGTTGA-GATCACGACGGCTGGTGTTCACGCACAGTGCTCG-ACGCAG-GATTTTGA 461
||||| || | ||||||| || || ||||| ||| |||||||| || || | || ||
Sbjct 381 CTACGTGGAAG-TCACGACAGCCGGAGTTCATGCAAAGTGCTCGTAC-CAAAGCTTC-GA 437
Query 462 -GATTGAGCAATGGCTCGC-TACTGATACTTCTCCTTATGAGCTCACCGCCGTACGGAAC 519
| ||||||||||||| || | | ||||| || || |||||||||| | || |||||
Sbjct 438 TG-TTGAGCAATGGCTTGCCTCC-GATACATCGCCGTATGAGCTCAGTACTGTTCGGAAT 495
Query 520 AATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATTCGGAAAAAG 579
|| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||| |
Sbjct 496 AACTGTCCGGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACT 555
Query 580 CTTTCTTGGGTCGT 593
|| |||||| ||||
Sbjct 556 CTCTCTTGGATCGT 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5