BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39770.1 Length=1283 Score E Sequences producing significant alignments: (Bits) Value Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 1687 0.0 > Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 Length=1050 Score = 1687 bits (913), Expect = 0.0 Identities = 1004/1049 (96%), Gaps = 2/1049 (0%) Strand=Plus/Plus Query 76 ATGGTTAGATTCATAGAAgaaaacacaaaacttgtagaaaaagaaaccgggaacaaatca 135 ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 1 ATGGTAAGATTCATAGAAGAAAACACAAAACTTGTGGAAAAAGAAACAGGAAACAAATCA 60 Query 136 aacaacgatgtaacaacaacGAAGAAGAAAGCTCTTCAAGATATCATTATCAACAATGGA 195 ||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||| Sbjct 61 AACAACGATGTAACAACAACGAAGAAGAAAGTTCTTCAAGATCTTAGTATCAACAATGGA 120 Query 196 GTAGGATTGATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCCCCTACTCATCTTAAA 255 | |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 121 GGAGGATTAATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAA 180 Query 256 TCTTTGTTGAAACAAAGCTCTTGGCTCACGGAACATCCATCAGCTTTGGATATGTTTGAA 315 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 TCTTTGTTGAAACAAAGCTCTTGGCTCACAGAACATCCATCAGCTTTGGATATGTTTGAA 240 Query 316 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 300 Query 376 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCT-AGAAAGATGAGAAGAAC 434 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 301 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCTAAG-AAGATGAGAAGAAC 359 Query 435 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCATAGAAAA 494 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 360 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAA 419 Query 495 GGTTTATAACTTTGTAAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 554 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTTTATAATTTTGTGAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 479 Query 555 CAAAGGACCAGAGCAAGGGTCCAAATATGAGCAAATTTTACAGGATAGTAAATCTCTTCT 614 |||||||||||||||||||||||||| |||| || | | ||||||||||||||||| Sbjct 480 CAAAGGACCAGAGCAAGGGTCCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCT 539 Query 615 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATCATAAATTAGTGGA 674 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 540 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGA 599 Query 675 GAAAACAAAATCTACTCCCGGAGCCCAAGTAGAGAACAACAAATTTTGTGTCTCTGTTCA 734 || |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 600 GACAACAAAATTTACTCCCGGAGCCCAAGTAGAGAACAATAAATTTTGTGTCTCGGTTCA 659 Query 735 CTTCCGACGCGTAGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 794 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CTTCCGACGTGTCGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 719 Query 795 GAAAGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTGGAGGTTCGTCCGAT 854 ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| || Sbjct 720 GAAGGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTAGAAGTTCGTCCTAT 779 Query 855 TATTAAATGGGACAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 914 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TATTAAATGGGATAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 839 Query 915 TTGTACCGACGTTTTCCCTCTTTATATCGGAGATGATCGCACCGACGAAGATGCATTCAA 974 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 840 TTGTACCGACGTGTTCCCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAA 899 Query 975 GGTATTGAGAGAACGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 1034 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GATATTGAGAGAAAGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 959 Query 1035 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1019 Query 1095 GGAATGGAAACAATTGAGATCTGGAGCAT 1123 ||||||||||||||||||||||||||||| Sbjct 1020 GGAATGGAAACAATTGAGATCTGGAGCAT 1048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47958629586 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5