BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39800.1 Length=1921 Score E Sequences producing significant alignments: (Bits) Value Ahg943979 jgi|Araly1|943979|scaffold_700208.1 2634 0.0 Ahg932186 jgi|Araly1|932186|scaffold_400174.1 1687 0.0 Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1 1184 0.0 > Ahg943979 jgi|Araly1|943979|scaffold_700208.1 Length=1576 Score = 2634 bits (1426), Expect = 0.0 Identities = 1519/1565 (97%), Gaps = 1/1565 (0%) Strand=Plus/Plus Query 60 TTTTCCTCTGCAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTAC 119 |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 TTTT-CTCGGGAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTAC 65 Query 120 ACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 ACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAG 125 Query 180 ACCGTCAATGGCACTTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAA 239 ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 126 ACCATCAATGGCAGTTACCAGTGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAA 185 Query 240 ACCGATATTCGTGTCCCCAAATTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACAATGGA 299 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 186 ACCGATATTCGTGTCCCCAAATTAGGGGTTATGCTTGTGGGTTGGGGAGGAAACAATGGA 245 Query 300 TCAACTCTCACCGCTGGTGTGATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGAC 359 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 246 TCAACTCTCACTGCTGGTGTCATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGAC 305 Query 360 AAAGTGCAACAAGCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGTGTCGGA 419 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 306 AAAGTGCAACAAGCGAATTACTTTGGGTCACTAACTCAAGCATCATCGATTCGTGTCGGA 365 Query 420 TCTTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCG 479 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 TCCTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCG 425 Query 480 GATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 GATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCT 485 Query 540 AGAGCCAGGGTTCTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 AGAGCCAGGGTTCTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATT 545 Query 600 GTGCCACTCCCTGGGATCTTCGATCCTGATTTCATAGCTGCTAATCAAGGGTCACGTGCT 659 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 546 GTGCCACTCCCTGGGATCTACGATCCTGATTTCATCGCTGCTAATCAAGGGTCACGTGCT 605 Query 660 AACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 AACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGG 665 Query 720 GAGTTTAAGGAGAAGAATAAGGTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACAGAG 779 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 666 GAGTTTAAGGAGAAGAATCAGGTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACTGAG 725 Query 780 CGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCATGGAGTCTGTG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 CGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCATGGAGTCTGTG 785 Query 840 GATAGGGATGAGGCTGAGATCTCTCCTTCAACACTTTATGCGATTGCTTGTGTTCTTGAG 899 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 786 GATAGAGATGAGGCTGAGATCTCTCCTTCTACGCTTTATGCGATTGCTTGTGTTCTTGAG 845 Query 900 GGAATCCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCAGGTCTAATTGATATG 959 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 846 GGGATCCCGTTCATCAATGGAAGCCCTCAGAACACCTTTGTTCCAGGTCTAATTGATATG 905 Query 960 GCGATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATG 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 GCGATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATG 965 Query 1020 AAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGCCTACTTCAATTGTGAGC 1079 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 966 AAATCTGTCTTGGTTGATTTCCTTGTTGGTGCAGGAATCAAGCCTACTTCAATTGTGAGC 1025 Query 1080 TACAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCT 1139 |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct 1026 TACAATCACTTGGGGAACAACGATGGGATGAACCTCTCAGCTCCACAGACATTCAGATCT 1085 Query 1140 AAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTT 1199 ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1086 AAGGAGATCTCGAAAAGCAATGTTGTGGACGATATGGTTGCTAGCAACGGTATCCTCTTT 1145 Query 1200 GAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCGTATGTTGCGGAT 1259 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1146 GAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCCTATGTTGCGGAT 1205 Query 1260 AGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATT 1319 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1206 AGTAAGCGAGCGATGGACGAGTACACATCAGAGATCTTCATGGGAGGGAAGAACACAATT 1265 Query 1320 GTGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTT 1379 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 GTAATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTT 1325 Query 1380 CTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGGGAAAGTTTCAC 1439 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1326 CTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCTGAGGGAGAGGGAAAGTTTCAT 1385 Query 1440 TCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCG 1499 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1386 TCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCGCTTGTGCCGCCG 1445 Query 1500 GGAACTCCGGTGATTAACGCACTGTCGAAGCAGCGGGCTATGCTGGAGAATATTATGAGG 1559 ||||| |||||| |||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 1446 GGAACCCCGGTGGTTAATGCGCTGTCGAAGCAGCGGGCTATGCTGGAGAACATTATGAGG 1505 Query 1560 GCGTGCGTTGGACTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAACATGAAGA 1619 || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1506 GCATGCGTTGGGCTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAACAGGAAGA 1565 Query 1620 AGCAT 1624 ||||| Sbjct 1566 AGCAT 1570 > Ahg932186 jgi|Araly1|932186|scaffold_400174.1 Length=1574 Score = 1687 bits (913), Expect = 0.0 Identities = 1350/1562 (86%), Gaps = 26/1562 (2%) Strand=Plus/Plus Query 72 AAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTACACAGAGAATGAG 131 |||||||| || |||||||| ||||| |||||||| || || || ||||||||||||||| Sbjct 19 AAAATGTTCATCGAGAGCTTTAAAGTAGAGAGCCCAAATGTCAAATACACAGAGAATGAG 78 Query 132 ATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAGACCGTCAATGGC 191 ||||| || |||||||||||||| || || ||||| || |||||| | | ||| || || Sbjct 79 ATTCATTCGGTGTACGATTACGAAACAACAGAGGTCGTCCATGAG-A-ATCGT-AACGGT 135 Query 192 ACTTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAAACCGATATTCGT 251 || || ||||||||||||||||||||| |||||||||||||||||||||| || | |||| Sbjct 136 ACATATCAATGGATTGTGAAGCCAAAGTCTGTCAAATACGATTTCAAAACAGACACTCGT 195 Query 252 GTCCCCAAATTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACAATGGATCAACTCTCACC 311 |||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||| Sbjct 196 GTCCCCAAATTAGGGGTTATGCTTGTTGGTTGGGGAGGAAACAATGGATCAACACTAACC 255 Query 312 GCTGGTGTGATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGACAAAGTGCAACAA 371 |||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct 256 GCTGGTGTCATTGCTAACAAAGAAGGAATCTCGTGGGCGACTAAAGACAAAGTGCAACAA 315 Query 372 GCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGTGTCGGATCTTTTAACGGT 431 || |||||||| || ||||| ||||||||||| ||||||||||| || |||| || ||| Sbjct 316 GCTAATTACTTTGGTTCACTTACTCAAGCTTCTTCGATTCGTGTTGGTTCTTACAATGGT 375 Query 432 GAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCGGATGATGTTGTG 491 |||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 376 GAAGAGATTTACGCTCCTTTCAAGAGTCTTCTTCCAATGGTGAATCCTGATGATGTTGTG 435 Query 492 TTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCTAGAGCCAGGGTT 551 ||||| || |||||||||||||||||||||||||| ||||| ||||||||||| || ||| Sbjct 436 TTTGGTGGTTGGGATATAAGTGACATGAACTTAGCTGATGCTATGGCTAGAGCTAGAGTT 495 Query 552 CTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATTG-TGCCACTCCC 610 ||||| || || ||||||||||| || || ||||||||||||| || || | ||||| || Sbjct 496 CTTGACATTGATTTGCAGAAACAACTTAGACCTTACATGGAGACCA-TGATCCCACTTCC 554 Query 611 TGGGATCT-TCGATCCTGATTTCATAGCTGCTAATCAAGGGTCACGTGCTAACCA-CGTG 668 ||| |||| | || ||||||||||| ||||| |||||||||||||||||||| | |||| Sbjct 555 TGGAATCTAT-GACCCTGATTTCATTGCTGCGAATCAAGGGTCACGTGCTAA-TAGCGTG 612 Query 669 ATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGGGAGTTTAAG 728 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 613 ATCAAAGGTACCAAGAAGGAACAAGTTGATCACATCATCAAGGACATGAGGGAGTTTAAG 672 Query 729 GAGAAGAATAAGGTGGATAAGGTTG-TGGT-TCTCTGGACGGCTAACACAGAGCGTTATA 786 |||||||| || ||||||||| ||| | || | | ||||| || |||||||||||||||| Sbjct 673 GAGAAGAACAAAGTGGATAAG-TTGGTTGTGT-TATGGACTGCAAACACAGAGCGTTATA 730 Query 787 GCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCAT-GGAGTCTGTGGATAGG 845 |||||||| | || ||| | || ||||||||||||||||| || || ||||| || | | Sbjct 731 GCAATGTGATTGTAGGGCTTAATGATACAATGGAGAATCT-ATTGGCTTCTGTTGAAAAG 789 Query 846 GATGAGGCTGAGATCTCTCCTTCAACACTT-TATGCGATTGCTTGTGTTCTTGAGGGAAT 904 || ||| |||||||||| || || || || ||||| ||||||||||||||||| || || Sbjct 790 GACGAGTCTGAGATCTCGCCGTCTACT-TTGTATGCTATTGCTTGTGTTCTTGAAGGTAT 848 Query 905 CCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCAGGTCTAATTGA-TATGGCGA 963 ||| ||||||||||| || ||||| || || ||||| || ||||| || || | |||| | Sbjct 849 CCCTTTCATCAATGGGAGTCCTCAGAATACTTTTGTCCCCGGTCTTATCGAGT-TGGCTA 907 Query 964 TCAG-GAACAAT-GTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAA 1021 | | ||| ||| |||| ||| |||||||||||||||||||||||||| || |||||||| Sbjct 908 T-ATCGAAGAATTGTTT-GATTGGTGGAGATGATTTCAAGAGTGGTCAGACTAAGATGAA 965 Query 1022 ATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGCCTACTTCAATTGTGAGCTA 1081 ||| || ||||| |||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct 966 ATCCGTTTTGGTCGATTTCCTTGTTGGAGCTGGCATCAAGCCTACTTCGATTGTGAGCTA 1025 Query 1082 CAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCTAA 1141 ||||| |||||||| ||||| || ||||| |||||||| || ||||||||| | ||||| Sbjct 1026 TAATCATTTGGGAAATAACGACGGGATGAACCTCTCAGCGCCGCAGACTTTCCGCTCTAA 1085 Query 1142 GGAGATCTCCAAA-AGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTG 1200 |||||| || ||| |||||||| || ||||| ||||| ||||| ||||| |||||||||| Sbjct 1086 GGAGATTTC-AAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTG 1144 Query 1201 AGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCGTATGTTGCGGATA 1260 |||| || |||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1145 AGCCCGGTGAACACCCTGACCATGTCGTTGTCATCAAGTATGTACCATATGTTGCGGATA 1204 Query 1261 GTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATTG 1320 |||| |||| |||||||||||||| || ||||||||||||||||||| ||||||||||| Sbjct 1205 GTAAAAGAGCAATGGACGAGTACACGTCTGAGATATTCATGGGAGGGAGGAACACAATTG 1264 Query 1321 TGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTTC 1380 ||||||| || || || |||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 1265 TGATGCATAACACTTGTGAGGACTCACTCTTGGCTGCTCCAATTATCTTGGATCTTGTTC 1324 Query 1381 TCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGGGAAAGTTTCACT 1440 | ||||| || ||||||||||||||||| |||||| |||| |||||||| |||||||||| Sbjct 1325 TTCTCGCTGAACTCAGCACCAGGATCCAATTCAAAGCCGAAGGAGAGGGGAAGTTTCACT 1384 Query 1441 CTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCGG 1500 ||||||| || || || ||||||||||| |||||||| |||||||| ||||||||||| | Sbjct 1385 CTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCTG 1444 Query 1501 GAACTCCGGTGATTAACGCACTGTCGAAGCAGCGGGCTATGCTGGAGAATATTATGAGGG 1560 |||| |||||| ||||||| ||||||||||||||||| |||||||| || ||| | |||| Sbjct 1445 GAACACCGGTGGTTAACGCTCTGTCGAAGCAGCGGGCAATGCTGGAAAACATTCTTAGGG 1504 Query 1561 CGTGCGTTGGACTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAAC-ATGAAGA 1619 | |||||||| || || || |||||||||||||||||||| | |||||||| |||| || Sbjct 1505 CCTGCGTTGGGCTTGCGCCAGAGAACAACATGATCATGGAGTACAAGTGAAGGATGAGGA 1564 Query 1620 AG 1621 || Sbjct 1565 AG 1566 > Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1 Length=1818 Score = 1184 bits (641), Expect = 0.0 Identities = 1276/1579 (81%), Gaps = 58/1579 (4%) Strand=Plus/Plus Query 60 TTTTCC-TCTGCAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGC-CCGAACGTGAAGT 117 |||||| | ||||||||||| || || |||||||| ||||| | | ||||||||||||| Sbjct 52 TTTTCCTTAGGCAAAAATGTTCATCGAAAGCTTCAAGGTTGA-ATCTCCGAACGTGAAGT 110 Query 118 ACACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGA 177 |||| ||||||||||| || || |||||||| ||| | || || ||| ||||||||||| Sbjct 111 ACACCGAGAATGAGATCCATTCAGTGTACGACTACCAAACCACTGAGCTTGTTCATGAG- 169 Query 178 AGACCGTCAATGGCAC-TTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGA-TTT 235 | | | || || | || ||||||| |||||||||||| || || ||||| || ||| Sbjct 170 A-A-CAAAAACGGTGCGTT-TCAATGGACTGTGAAGCCAAAAACCGTGAAATATGAGTTT 226 Query 236 CAAAACCGATATTCGTGTCCCCAAA-TTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACA 294 || ||||| | || ||| || ||| || || || ||||| || |||| |||||| |||| Sbjct 227 -AAGACCGACACTCATGTTCCAAAACTT-GGAGTAATGCTCGTTGGTTGGGGAGGCAACA 284 Query 295 ATGGATCAACTCTCACCGCTGGTGTGATTGCGAA-CAAAGAAGGAATCTCGTGGGCAACG 353 |||| || || || ||||||||||| || || || | || ||||| || ||||| ||| Sbjct 285 ATGGTTCTACGCTTACCGCTGGTGTTATCGCCAATC-GTGAGGGAATATCTTGGGCTACG 343 Query 354 AAGGACAAAGTGCAACAAGCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGT 413 ||||| |||||||| ||||| ||||| ||||||||| |||| ||||| || || ||||| Sbjct 344 AAGGAGAAAGTGCAGCAAGCTAATTATTTCGGGTCATTAACCCAAGCATCCTCTATTCGG 403 Query 414 GTCGGATCTTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTG 473 ||||| |||||||| |||||||| ||||||||||||||||| ||||| || || |||||| Sbjct 404 GTCGGGTCTTTTAATGGTGAAGAAATCTATGCTCCTTTCAAAAGTCTTCTCCCCATGGTG 463 Query 474 AATCCGGATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCC 533 ||||| || || ||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 464 AATCCTGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCA 523 Query 534 ATGGCTA-GAGCCAGGGTTCTTGATATCGA-CTTGCAGAAA-CAGCT-CAGGCC-TTACA 588 ||||| | |||||| ||| || || ||||| ||| || ||| ||||| | | || || || Sbjct 524 ATGGC-ACGAGCCAAGGTCCTAGACATCGACCTT-CA-AAAGCAGCTGC-GTCCGTT-CA 578 Query 589 TGGAGAACATTGTGCCACTCCCTGGGATCTTCGATCCTGATTTCATAGCTGCTAATCAAG 648 ||||| |||| || ||||||||||| || ||||| || |||||||| || ||||| || | Sbjct 579 TGGAGCACATGGTCCCACTCCCTGGAATATTCGACCCAGATTTCATCGCAGCTAACCAGG 638 Query 649 GGTCACGTGCTAACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACA-TCATC 707 |||| ||||| ||||||||||||||||| |||||||| ||||| |||| || | ||||| Sbjct 639 GGTCGCGTGCCAACCACGTGATCAAAGGCACCAAGAAACAACAACTCGAGCA-AGTCATC 697 Query 708 AAGGACATGAGGGAGTTTAAGGAGAAGAATAAGGTGGATAAGGTTGTGGTTCTCTGGACG 767 |||||||| |||||||| || ||||| || || |||||||| || ||||| || |||||| Sbjct 698 AAGGACATCAGGGAGTTCAAAGAGAAAAACAAAGTGGATAAAGTGGTGGTACTGTGGACG 757 Query 768 GCTAACACAGAGCGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTC 827 || |||||||| | || ||||||||||| ||||| | ||||| || | ||||||||| Sbjct 758 GCGAACACAGAAAGATACAGCAATGTGGTGGTTGGTCTTAACGACACGACGGAGAATCTA 817 Query 828 ATG-GAGTCTGTGGATAGGGATGAGGCTGAGATCTCTCCTTCAACACTTTATGCGATTGC 886 ||| | ||| |||| | ||||||||||||||| |||||||| |||||||| || ||||| Sbjct 818 ATGTCA-TCTTTGGAAAAGGATGAGGCTGAGATTTCTCCTTCTACACTTTACGCCATTGC 876 Query 887 TTGTGTTCTTGAGGGAA--TCCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCA 944 |||||||||||| ||| | || |||||||||||||| || |||||||| ||||| || Sbjct 877 TTGTGTTCTTGA--GAACGTTCCTTTCATCAATGGAAGTCCACAAAACACTTTTGTCCCT 934 Query 945 GGTCTAATTG-ATATGGCGA-TCAG-GAACAATGTTTTGATCGGTGGAGATGATTTCAAG 1001 || || |||| || |||| | | || ||| | || ||||||||||| ||||| |||||| Sbjct 935 GGGCTTATTGAAT-TGGCCATTGAGAGAA-ACTG-CTTGATCGGTGGTGATGACTTCAAG 991 Query 1002 AGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAG 1061 |||||||| ||||||||||| |||||| | || |||||||| ||||| || |||||||| Sbjct 992 AGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTGGTGCCGGAATCAAA 1051 Query 1062 CCTACTTCAATTGTGAGCTACAATCA-CTTGGGAAACAACGATGGAATGAATC-TCTCAG 1119 || || || |||||||| ||||| || |||||| |||||||| || ||||| | | |||| Sbjct 1052 CCGACGTCGATTGTGAGTTACAACCACCTTGGG-AACAACGACGGCATGAA-CTTGTCAG 1109 Query 1120 CTCCACAGACTTTCAGATCTAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTG 1179 | || || || ||| | || |||||||| || || ||||||||||||||||||||||||| Sbjct 1110 CGCCGCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATGTCGTGGACGATATGGTTG 1169 Query 1180 CTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGT 1239 |||||| || || | | |||||||| |||||||| ||||| ||||| ||||| |||| Sbjct 1170 GTAGCAACGGGATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTGTGGTCATTAAGT 1229 Query 1240 ATGTACCGTATGTTGCG-GATAGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTC 1298 |||| || ||||| | | ||||| ||| |||| ||||||||||||||||||||||||||| Sbjct 1230 ATGTGCCATATGTAG-GAGATAGCAAGAGAGCAATGGACGAGTACACATCAGAGATATTC 1288 Query 1299 ATGGGAGGGAAGAACACAATTGTGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCT 1358 ||||||||||||||||| |||||||||||||| || || || ||||||||||| |||||| Sbjct 1289 ATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTGAAGACTCTCTCTTGGCTGCT 1348 Query 1359 CCAATCATCTTGGATCTTGTTCTCCTCGCGGAGCTCAGC-AC-CAGGATCCAGTTCAAAT 1416 ||||| || ||||| |||||||| || || ||||||| | || | |||||||||||| Sbjct 1349 CCAATTATTTTGGACCTTGTTCTTCTTGCTGAGCTCA-CTACTC-GGATCCAGTTCATGG 1406 Query 1417 CCGAGGGAGAGGGAAAGTTTCACTCTTTCCATCCTGTGGC-CAC-CATACTCAGCTACCT 1474 |||| ||||||||||| || ||||||||||| ||||| | | | | || || ||||| Sbjct 1407 CCGAAACCGAGGGAAAGTTCCATTCTTTCCATCCGGTGGCTC-CTC-TCCTAAGTTACCT 1464 Query 1475 CACCAAGGCACCACTTGTACCGCCGGGAACTCCGGT-GATTAACGCACTGTCGAAGCAGC 1533 | | ||||||||||| || || || || || || || | | || || ||||||| |||| Sbjct 1465 CTCAAAGGCACCACTGGTCCCTCCTGGCACGCCAGTTG-TGAATGCTTTGTCGAAACAGC 1523 Query 1534 GGGCTATGCTGGAGAATATTA-TGAGGGCGTGCGTTGGACTGGCTCCGGAGAACAACATG 1592 | || ||||| ||||| || | | || || || |||||||| ||||| |||||||||||| Sbjct 1524 GTGCAATGCTTGAGAACAT-ACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACATG 1582 Query 1593 AT-CATGGAATTCAAGTGA 1610 || | | || | ||||||| Sbjct 1583 ATTC-TCGAGTACAAGTGA 1600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72181014275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5