BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39820.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490767 jgi|Araly1|490767|fgenesh2_kg.7__200__AT4G39820.1 2135 0.0
> Ahg490767 jgi|Araly1|490767|fgenesh2_kg.7__200__AT4G39820.1
Length=1596
Score = 2135 bits (1156), Expect = 0.0
Identities = 1356/1450 (94%), Gaps = 23/1450 (2%)
Strand=Plus/Plus
Query 137 GAACCGACGGCATTCGAATTAGCCTCATCCCAAGTCACATCCGTCGCCGATCTACCACCG 196
||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 130 GAAGCGACGACATTCGAATTAGCCTCATCACAAGTCACATCCGTCGCCGATCTACCACCG 189
Query 197 GAACGATTCAATTCGCTCGACGAATTAACACACGATCTCGGCTCGCTCCACGAGCTTTCG 256
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 190 GAACGATTCAATTCGCTCGACGAATTGACCCACGATCTCGGCTCGCTCCACGAGCTTTCG 249
Query 257 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTCCTC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 250 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTTCTC 309
Query 317 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 369
Query 377 CTTCGTCGCTCCGATGAAGCTTCTCATGAGCTTAATTCCTTGCACGATTTCGACGGGACG 436
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 370 CTTCGTCGCTCCGATGAAGCTGCTCATGAGCTTAATTCTTTGCACGATTTCGACGGGACG 429
Query 437 CATTACAGGTACGAATCGTTCCCTGAGATTTACCCTAATCGGAGAGGATCTATGGTTCCT 496
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 430 CATTACAGGTACGAATCGTTCCCTGAGATCTACCCTAATCGGAGAGGATCGATGGTTCCT 489
Query 497 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 549
Query 557 TTAGATCGTTTATATGTTTTGCTTGACTTTGTTCGAGATCGAATCAGAGAGAAAGAATCT 616
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 550 TTAGATCGGTTATACGTTTTGCTTGACTTTGTTCGAGATCGAATTAGAGAGAAAGAATCT 609
Query 617 CAGAGTTTAGA-GAGTTCTGTGGAATTGTGGAAGAAAAGAGAGACATTTGTGATGAATTG 675
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 610 CAGAGTTTAGATG-GTTCTGTGGAATTGTGGAAGAAAAGAGAGACCTTTGTGATGAATTG 668
Query 676 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTGTCTTTGGATTTGATGAAGGA 735
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTATCTTTGGATTTGATGAAGGA 728
Query 736 ATTGATCAA-TCGTGATCCGTTAGACCCGGTTTTGATTTCGAAACTAGGGTCTGTTCAGA 794
|||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 729 ATTGAT-AACTCGTGATCCGTTAGACCCGGTTTTGATTTCGAAGCTAGGTTCTGTTCAGA 787
Query 795 TGCAGTTTGGTGATGTAGAAGGAGCTAAAACTACGTTTGATAGAGTTGAGAAGATGTTGA 854
|||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||
Sbjct 788 TGCAGTTTGGTGATATAGAAGGAGCTAAAACTACGTTTGATCGGGTCGAGAAGATGTTGA 847
Query 855 ATGAAGGAAAGAGCAATGGTTTATTGAACGAGATACAGTTCAACAATCTTGTTGGTAGGA 914
||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||
Sbjct 848 ATGAAGGAAAGAGCAATGGGTTATTGAATGAGATACAGTTCAAGAATCTTGTGGGGAGGA 907
Query 915 ATAAGGCTTTGGTTTATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 ATAAGGCTTTGGTTCATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 967
Query 975 AATGCATTGAAAGGGATAACTCTGATATTATCGCTGTCAACAATAAGGCTCTTTGTTTGA 1034
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 968 AATGCATTGAAAGGGATAACTCGGATATTATTGCTGTCAACAATAAGGCTCTTTGTTTGA 1027
Query 1035 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCATTGGAGAGAGTGC 1094
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1028 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCACTGGAGAGAGTGC 1087
Query 1095 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAATTTGTGTAGTATGTATGAGTTGGCTT 1154
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1088 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAACTTGTGTAGTATGTATGAGTTGGCTT 1147
Query 1155 ATGTTAATCATACTGATGTTAAGCGGACGTTAAACAATTGGATTGCACGTGTTGCTCCTG 1214
|||||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1148 ATGTTAATCACACCGATGTCAAGCGGACGTTGAACAATTGGATTGCGCGTGTTGCTCCTG 1207
Query 1215 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTC-ATTCCAAACAAAGGTA-ATT 1272
|||||||||||||||||||||||||||||||||||||| || | | | |||
Sbjct 1208 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTGTAT-CTGTTCTTCT-TCCATT 1265
Query 1273 AGTCAAAGAGTTTATGTCTTCAATGATGAAACAA----ATCTTGGTGGGTTTGGCCTCAG 1328
| || ||| | ||| | ||| ||| | |||||| |||||||||||||||
Sbjct 1266 CTTGAAT---TTTCCCTTTTCTA-GATCAAAGATGTTGATCTTGCTGGGTTTGGCCTCAG 1321
Query 1329 CTGGAGACTCTGTTGTTGCAATTACCGGCTTCAAATTCGTTGTAGTTTTCTGTTGTGTAA 1388
|||||| |||||||| ||| |||||||||| ||| || ||||||||||||| |||| ||
Sbjct 1322 CTGGAGTCTCTGTTGATGCGATTACCGGCTACAAGTTTGTTGTAGTTTTCTATTGT--AA 1379
Query 1389 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTT-CCTGCATTCGTTTTC-TCA 1446
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1380 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTTTCCTGCATTCGTTTTCGTCA 1439
Query 1447 TATTCATCTTCTTATAACGtttttt-tG-CATTTGCCGTTAACCACTAATGAAGAATGTG 1504
||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||
Sbjct 1440 TATTCATCTTCTTATAACGTTTTTTGTTACACTTGCCGTTAACCACTAATGACGAATGTG 1499
Query 1505 TGTTCTTGCAACTCTTCCTATGCACAGAGATTTTGGGTAAATCAAATATTTAAAGCCATG 1564
||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1500 TGTTCTTTCAACTCTTCCTATGCACAGAGATTTTGGGTAA-TCAAGTATTTAAAGCCATG 1558
Query 1565 TATTTTGAGT 1574
||||||||||
Sbjct 1559 TATTTTGAGT 1568
Score = 113 bits (61), Expect = 4e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 44 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCCGAATTCAATCCCTCCTCCACTGAT 103
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCTGAATTCAATCCCTCTTCCACTGAT 60
Query 104 TCCACCG 110
|||||||
Sbjct 61 TCCACCG 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5