BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39960.1 Length=1716 Score E Sequences producing significant alignments: (Bits) Value Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1 2771 0.0 Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1 1240 0.0 > Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1 Length=1668 Score = 2771 bits (1500), Expect = 0.0 Identities = 1615/1671 (97%), Gaps = 5/1671 (0%) Strand=Plus/Plus Query 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60 Query 61 ATTACGGGAGTGTAATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 ATTACGGGAGTGTAATGGCTCTTATACAATTCGGAAGTTCATGTGTTGCTCAATGGGGGA 120 Query 121 TTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCTTCGTCCTCACTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180 Query 181 ACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 ACAATTGCATCAGCCAGATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240 Query 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAG 300 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCGTAATACACATTCTCGTAGAGGAG 300 Query 301 CTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATG 360 ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| Sbjct 301 CTCGCTTCACTGTTAGAGCCGATGCTGATTTCTATTCTGTCCTTGGAGTCTCTAAAAATG 360 Query 361 CAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATG 420 |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || | Sbjct 361 CAACCAAAGCTGAGATTAAAAGTGCTTATCGGAAGCTCGCTAGGAGTTACCATCCGGACG 420 Query 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480 Query 481 TATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 TATCAGATGATGAGAAAAGATCTCTGTACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540 Query 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCG 600 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCATTTGATCTATTTGAGTCATTATTCG 600 Query 601 AAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 601 AAGGAATGGGTGGGATGGGAGGAATGGGAGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660 Query 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720 Query 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780 Query 781 CTGGAGCTAAAG-CGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAG 839 ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 781 CTGGAGC-AAAGGCGGGAACCAAACCAACCAAATGCAAAACGTGTGGCGGGCAAGGACAG 839 Query 840 GTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCG 899 ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 840 GTGGTGGCATCGACGAGGACACCACTCGGTGTATTCCAACAAGTCATGACTTGCTCTCCA 899 Query 900 TGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTG 959 || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 900 TGCAACGGAACTGGAGAGATATCAAAACCATGTGGTGCATGTTCAGGAGATGGACGTGTG 959 Query 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019 Query 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AGAGTAAGGGGAGAAGGAAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079 Query 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1080 GTTATTGAGGTTATTCCGGATCCGATTTTGAAGCGTGATGATACAAATATACTTTATACG 1139 Query 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199 ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| Sbjct 1140 TGTAAGATATCGTATGTAGATGCCATATTAGGGACGACTCTGAAGGTTCCAACAGTGGAT 1199 Query 1200 GGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCT 1259 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| Sbjct 1200 GGAGAGGTGGATTTGAAAGTACCAGCAGGGACACAACCGAGCACGACATTGGTAATGGCG 1259 Query 1260 AAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTG 1319 | ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct 1260 AGAAAAGGAGTTCCGGTTTTGAATAAGAGTAAGATGAGAGGTGACCAATTAGTGAGAGTG 1319 Query 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCT 1379 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGAAGCTTGTTGAGGAGCTTGCT 1379 Query 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439 Query 1440 AATGTGATGTTATATAGATTCATCATTCTCTGCTTGTCGTCTTTCTAATGGTTCGTCTAA 1499 ||| || ||||||||||||||||||||||||||||||| |||||||||||| || ||||| Sbjct 1440 AATTTGGTGTTATATAGATTCATCATTCTCTGCTTGTCTTCTTTCTAATGGGTCTTCTAA 1499 Query 1500 CGATGGAGAAGATAAGCAAGAGGCAA-AAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1500 TGATGGAGAAGATAAGCAAGAGG-AAGAAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558 Query 1559 AGAACTCTGGTTTTGGGTTTTCCTCTTCAATTTTTGTGTTTTACTTTTAAAACAAATTTT 1618 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1559 AGAACTCTATTTTTGGGTTTTCCTCTTCAATTTTTGTGTTTTACTTTTAAAACAATTTTT 1618 Query 1619 ATGGATTTATCAGGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1669 ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1619 ATGGATTTATC-GGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1668 > Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1 Length=1591 Score = 1240 bits (671), Expect = 0.0 Identities = 1133/1354 (84%), Gaps = 40/1354 (3%) Strand=Plus/Plus Query 74 AATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCG 133 ||||||||| ||||||||||||||| ||||||||||||||| ||| | ||||||||| Sbjct 117 AATGGCTCTAATACAATTTGGAAGTACATGTGTTGCTCAAT---GGAGTATTCGTCCTCA 173 Query 134 GTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTC---TCACCAAGACAATTGCAT 190 |||||||| | ||||| |||||| |||||| | || || || |||| | ||| ||| Sbjct 174 ATTTGCTGTGAGAGCTTATTATCCCAGCAGACTCGAATCAAGTCGCCAACAAAATCCCAT 233 Query 191 CAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTT-TGCACA-GGGCTCTTTA 248 ||||||||||||||| ||||||||||||||||||||||||| | |||| ||| || || Sbjct 234 GAGCCAAATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTCT-CACATGGG-TCCTTG 291 Query 249 CCCTTCTTGT-CATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTT 307 |||||||||| || |||||||| | ||| |||| ||| |||| |||||| ||||||| Sbjct 292 CCCTTCTTGTCCA-TGACGGGAATGTCTAGAAATATGCATCCTCGCAGAGGATCTCGCTT 350 Query 308 CACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAA 367 |||||||||||||||| | |||| |||||| || || ||||| ||||||||||||||||| Sbjct 351 CACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAA 410 Query 368 AGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAA 427 | |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 411 ATCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCAGATGTGAACAA 470 Query 428 GGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGA 487 |||| |||| |||||||| ||||| |||||||||||||||||||| ||| | |||||||| Sbjct 471 GGATCCTGGTGCAGAAGAGAAATTCAAAGAAATAAGTAATGCATACGAGGTTTTATCAGA 530 Query 488 TGATGAGAA-AAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTG--G 544 |||||| || || |||||| ||||| || ||||| ||||| ||| | |||||||||| | Sbjct 531 TGATGAAAAGAA-ATCTCTTTACGATAGGTATGGTGAGGCCGGACTAAAAGGCGCTGCTG 589 Query 545 -AATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAG 603 |||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||| Sbjct 590 GAATGGGTGGCATGGGGGATTTTAGTAATCCGTTCGATCTATTCGAGTCATTATTCGAAG 649 Query 604 GAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAG 663 | |||||||||||||||||| || ||||| |||||| || | |||||| ||||||| Sbjct 650 GCATGGGTGGGATGGGAGGA--GG----TGGAACGGGTAG-AG-G-TTCAAGAAGCAGAG 700 Query 664 CTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCG 723 | | |||||| |||| ||||||||| |||||||||| || ||||||||||||||||||| Sbjct 701 CCGTGGATGGTCAAGACGAGTATTACACACTAATCTTAAACTTCAAAGAAGCGGTTTTCG 760 Query 724 GTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGC-AATGGTTCT 782 | || || |||||||| |||||||| ||| | |||||||| |||||||| || ||||| Sbjct 761 GGATGGAAAAAGAAATAGAGATATCACGGCTCGAGAGCTGCGGGACTTGTGAA-GGTTCA 819 Query 783 GGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTG 842 || || ||| ||||||||||||| |||||||||| || |||||||| ||||| || ||| Sbjct 820 GGTGCAAAACCGGGAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGTCAAGTG 879 Query 843 GTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTC-TCCGTG 901 || ||||| | || || || ||||| || ||||||||||| ||||||||||| ||| || Sbjct 880 GTTTCATCAGCAAGAACTCCTCTCGGCGTGTTCCAACAAGTCATGACTTGCTCATCC-TG 938 Query 902 TAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAG 961 |||||| ||||| ||||| || | ||||||||| | || |||||||| ||||| ||||| Sbjct 939 TAACGGCACTGGAGAGATCTCGACGCCGTGTGGTACTTGTTCAGGAGACGGACGCGTGAG 998 Query 962 -AAGGACAAAGCGGATTAGTCTTAAAGTTCCTGC-GGGTGTGGATTCTGGAAGTAGGTTA 1019 ||| ||||| ||||| ||||| ||||| || || ||| || ||||| || || ||||| Sbjct 999 GAAG-ACAAAACGGATAAGTCTCAAAGTACCAGCTGGG-GTTGATTCAGGTAGCCGGTTA 1056 Query 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079 ||||| || |||||||| |||||||| |||||||| |||||||| || ||||| |||| Sbjct 1057 AGAGTAAGAGGAGAAGGCAATGCAGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTT 1116 Query 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139 ||||| || ||||| ||||| ||||||||||| || || ||||||||||| || || || Sbjct 1117 GTTATAGAAGTTATACCAGACCCGGTTTTGAAACGGGACGATACAAATATTCTCTACACT 1176 Query 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199 || |||||||||||| | ||||| || || ||||| || ||||| || |||||||||||| Sbjct 1177 TGCAAGATATCGTATATTGATGCGATTTTAGGGACAACATTGAAAGTGCCAACAGTGGAT 1236 Query 1200 GG-AGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACA-TTGGTGATGG 1257 || | || | ||||||||||| || |||||||||||||| ||||||| ||| |||||| Sbjct 1237 GGGACAG-TAGATTTGAAAGTGCCAGCAGGGACACAACCTGGCACGACGCTTG-TGATGG 1294 Query 1258 CTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAG 1317 | ||||| ||||||||||| ||||| ||||| || |||||||| |||||||| ||||||| Sbjct 1295 CGAAAAAGGGAGTTCCGGTATTGAACAAGAGTAATATGAGAGGGGATCAGTTGGTGAGAG 1354 Query 1318 TGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGG 1377 | ||||| ||||| |||||||||||||| ||||| ||||||| ||| |||| ||||| | Sbjct 1355 TACAAGTGGAGATACCTAAGAGATTGAGCAAAGAGGAGAAGAAACTTATTGAAGAGCTTG 1414 Query 1378 CTGATATGAGCAAGAACAAGG-TAGCTAATAGCA 1410 |||||||||||||||||||| | |||||||||| Sbjct 1415 CTGATATGAGCAAGAACAAGACT-GCTAATAGCA 1447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64372514050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5