BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39970.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944002 jgi|Araly1|944002|scaffold_700231.1 1613 0.0
Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1 63.9 3e-09
> Ahg944002 jgi|Araly1|944002|scaffold_700231.1
Length=985
Score = 1613 bits (873), Expect = 0.0
Identities = 953/991 (96%), Gaps = 8/991 (1%)
Strand=Plus/Plus
Query 58 AGAGACAGAGATTCATCGATATGGCGGTTTCTTGCAACCACTCTGCGATTCTCTTCTCTC 117
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||
Sbjct 3 AGAGACAGAGATTCATC-A-ATGGCGGTTTCTTGCAGCCACTCTGCGATTCTCTTCTCT- 59
Query 118 CATCATCCACCGCTGGTTCCTCCTCCGTTACTTCTTCCTCGTCGCTCATCGGCTTTCCTC 177
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 C--CATCCACCGCTGGTTCCTCCTCCGTTTCTTCTTCCTCGTCGCTCATCGGCTTTCCTC 117
Query 178 GTTTCCAAACGCTGCGTTTCAAATCAAGAAGCGTTTATTCGAAATCTAGAGTTTCTTCTC 237
|||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||
Sbjct 118 GTTTCCAAACGCTGCGTTTCAAATCAAGAAGCTTTTATTCTAAATCTAGAG--T-TTCTC 174
Query 238 CTGTCTCGGCATTGCCTTTACGTTCTCTAGAAGCTCTGATTTTCGATTGCGACGGCGTGA 297
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 175 CTGTCTCGGCATTGCCTTCACGGTCTCTGGAAGCTCTGATTTTCGATTGCGATGGTGTGA 234
Query 298 TTCTCGAATCCGAGAATCTACACCGTCAAGCTTACAACGATGCTTTCTCGCATTTCGATG 357
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 TTCTCGAATCGGAGAATCTACACCGTCAAGCTTACAACGACGCTTTCTCGCATTTCGATG 294
Query 358 TTCGATGTCCTCCTTCTTCCTCTGAGTCTCTCGATTGGAGCCTCGAGTTCTACGATAAGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCGATGTCCTCCTTCTTCCTCTGAGTCTCTCGATTGGAGCCTCGAGTTCTACGATAAGT 354
Query 418 TTCAGAATCTAGTCGGAGGTGGGAAACCGAAAATGCGTTGGTATTTCAAAGAAAATGGAT 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 355 TTCAGAATCTAGTCGGAGGTGGAAAACCGAAAATGCGTTGGTATTTCAAAGAAAATGGAT 414
Query 478 GGCCAACTTCCACCATTTTTGACTCTCCTCCTCAGAATGACGATGATCGAGCCAAGTTAA 537
||||||||||||||||||| || || |||||| ||||||||| |||||||||||||||||
Sbjct 415 GGCCAACTTCCACCATTTTCGAGTCACCTCCTGAGAATGACGCTGATCGAGCCAAGTTAA 474
Query 538 TCGATACTCTTCAGGATTGGAAAACTGAGAGGTATAAAGAAATCATAAAATCAGGAAGTG 597
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 475 TCGATACTCTTCAGGATTGGAAAACTGAGAGATATAAAGAAATCATAAAATCAGGAAGGG 534
Query 598 TAGAACCAAGACCTGGTGTAATAAGACTAATGGATGAAGCAAAAGCTGCTGGGAAAAAAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TAGAACCAAGACCTGGTGTAATAAGACTAATGGATGAAGCAAAAGCTGCTGGGAAAAAAC 594
Query 658 TAGCTGTTTGTTCTGCAGCTACAAAGAGTTCAGTAATCTTATGTCTCGAGAATCTAATCG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TAGCTGTTTGTTCTGCAGCTACAAAGAGTTCAGTAATCTTATGTCTCGAGAATCTAATCG 654
Query 718 ATATCGAGCGGTTCCAAGGACTTGATTGCTTCCTTGCAGGGGATGATGTTAAGGAGAAAA 777
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 ATATTGAGCGGTTCCAAGGACTTGATTGCTTCCTTGCAGGAGATGATGTTAAGGAGAAAA 714
Query 778 AACCCGATCCTTCGATATATATTACAGCTGCCGAGAAGCTAGGTGTTTCAGTGAAAGACT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AACCCGATCCTTCGATATATATTACAGCTGCCGAGAAGCTAGGTGTTTCAGTGAAAGACT 774
Query 838 GTTTGGTCGTAGAGGACAGTGTGATTGGCCTGCAGGCTGCTACAAAAGCAGGGATGTCAT 897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTTTGGTCATAGAGGACAGTGTGATTGGCCTGCAGGCTGCTACAAAAGCAGGGATGTCAT 834
Query 898 GTGTGATCACGTACACTTCTTCAACCTCTGATCAGAATTTCAATGATGCGATTGCCGTAT 957
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GTGTGATTACATACACTTCTTCAACCTCTGATCAGGATTTCAATGATGCGATTGCCGTAT 894
Query 958 ACCCTGATCTCAGCAATGTGAAATTGAAGGACTTGGAAACTCTGCTTCAAACAATAGTCA 1017
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 895 ACCCTGATCTCAGTAATGTGAAATTGAAAGACCTGGAAACTCTGCTTCAAACAATTGTCA 954
Query 1018 CTGCAGCTTAAGACATTTGTCTCCTATTCAT 1048
||||||||||||| |||||||||||||||||
Sbjct 955 CTGCAGCTTAAGATATTTGTCTCCTATTCAT 985
> Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1
Length=1668
Score = 63.9 bits (34), Expect = 3e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1135 AAATAGCAGTACAATACAATCAAGACCTACCCTG 1168
||||||||||||||||||||||||||||||||||
Sbjct 1668 AAATAGCAGTACAATACAATCAAGACCTACCCTG 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5