BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39990.1 Length=1045 Score E Sequences producing significant alignments: (Bits) Value Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1 1426 0.0 > Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1 Length=993 Score = 1426 bits (772), Expect = 0.0 Identities = 859/899 (96%), Gaps = 14/899 (2%) Strand=Plus/Plus Query 142 agagaAGTGTTTCAATAGTTTGGCGTGAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 201 |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 98 AGAGAAGTGTTTCAATAGTTCGCCGTCAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 157 Query 202 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTAATCGGAGATTCGGCTGTTGGGAAA 261 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 158 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTGATCGGAGATTCGGCTGTTGGGAAA 217 Query 262 TCGCAACTACTTGCTCGATTCGCTAGAGACGAATTCAGCATGGATTCTAAAGCCACCATC 321 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 218 TCACAACTACTTGCTCGATTCGCTAGAGACGAATTCAGTATGGATTCTAAAGCCACCATC 277 Query 322 GGCGTCGAGTTCCAAACTCGTACCCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 381 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 278 GGCGTCGAGTTCCAAACTCGTACGCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 337 Query 382 TGGGATACCGCTGGTCAGGAAAGATACAGAGCCGTTACAAGCGCATACTACAGAGGAGCA 441 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 338 TGGGATACCGCTGGTCAGGAAAGATACAGAGCAGTTACAAGCGCATACTACAGAGGAGCA 397 Query 442 GTTGGCGCAATGCTGGTTTATGATATGACGAAACGTGAGACCTTTGAGCATATTCCGCGT 501 ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| || ||| Sbjct 398 GTTGGTGCAATGCTGGTTTATGATATGACTAAACGCGAAACCTTTGAGCATATCCCTCGT 457 Query 502 TGGCTTGAAGAACTGAGGGCGCACGCTGATAAGAACATTGTCATCATCCTTATTGGAAAC 561 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 458 TGGCTTGAAGAACTGAGGGCGCACGCCGATAAGAACATTGTCATCATCCTTATTGGAAAC 517 Query 562 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 518 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 577 Query 622 AAGGAAGGACTCTTTTTCCTCGAGACCTCTGCTTTAAACGCAACCAATGTCGAAAACTCC 681 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 578 AAGGAAGGACTCTTTTTCCTCGAGACCTCAGCTTTAAACGCAACCAATGTCGAAAACTCC 637 Query 682 TTCAACACTCTAATGACTCAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTG-- 739 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 638 TTCAACACTCTAATGACAGAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTGTC 697 Query 740 -A-A-----GGCGACTCAAATAACCCCGGTTCATTGGCTGGTAAGAAGATTCTCATCCCA 792 | | ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 698 GAGAATCAAGGCGACTCAAATAACCCCGGTTCCTTGGCTGGTAAGAAGATTGTCATCCCA 757 Query 793 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACTTGTTGTACTTCTTCTTGATCTGTC 852 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 758 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACATGTTGTAGTTCTTCTTGATCTGTC 817 Query 853 TCCT-ACTCAAGCAAGATTCAttttttttCCTCCTGAAATTTG-TGATAGAGAATGCTAC 910 || | || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 818 TCGTTAC--AAGCAAGATTCATTTTTTTTCCTCCTGAAATTTGGTGATAGAGAATGCTAC 875 Query 911 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTAGTTCATTAAACATTGGTGTG 970 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 876 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTGGTTCATTCAACATTGGTGTG 935 Query 971 CAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAATATGAAACAA 1029 |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 936 CAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAATATGAAACAA 993 Score = 154 bits (83), Expect = 1e-36 Identities = 93/97 (96%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 1 AATAATCAGCCAACTAGC-TTTTTAA--TT-TTCTCTACAATTCCTCTGTCGCTCTCACC 56 |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| Sbjct 1 AATAATCAGCCAACTAGCTTTTTTAATTTTCTTCTCTACAATTCCTCTGTCGCTCTCACC 60 Query 57 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 93 ||||||||||||||||||||||||||||||||||||| Sbjct 61 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 97 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38885375340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5