BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01010.2
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486867 jgi|Araly1|486867|fgenesh2_kg.6__1__AT5G01010.1 1777 0.0
> Ahg486867 jgi|Araly1|486867|fgenesh2_kg.6__1__AT5G01010.1
Length=1587
Score = 1777 bits (962), Expect = 0.0
Identities = 1097/1159 (95%), Gaps = 21/1159 (2%)
Strand=Plus/Plus
Query 1 GCTTGGCTTGGCGGTGGCATGGAGCTCTGGATTTGTGTGTGAGTGAGTAGATCGCGCAAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GCTTGGCTTGGCGGTGGCATGGAGCTCTGGGTTTGTGTGTGAGTGAGTAGATCGCGCAAA 60
Query 61 GAATCTGAAAATGGCGTCAACGGAAGGCCTTATGCCTATCACCCGGGCTTTTCTCGCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATCTGAAAATGGCGTCAACGGAAGGCCTTATGCCTATCACCCGGGCTTTTCTCGCTTC 120
Query 121 TTACTACGACAAATATCCTTTCTCTCCTCTTTCCGACGACGTTTCTCGGCTTTCCTCTGA 180
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TTACTACGACAAATATCCCTTCTCTCCTCTTTCCGACGACGTTTCTCGACTTTCCTCTGA 180
Query 181 CATGGCATCTCTGATTAAGCTATTGACCGTCCAATCTCCCCCTTCACAAGGGGAAACTTC 240
||| || ||||| ||| ||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 181 CATCGCTTCTCTTATTCAGCTACTAACCGTCCAATCTCCCCCTTCACAAGGTGAAACTTC 240
Query 241 CCTGATTGACGAAGCAAACCGTCAGCCCCCTCACAAAATTGATGAGAATATGTGGAAAAA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGATTGACGAAGCAAACTGTCAGCCCCCTCACAAAATTGATGAGAATATGTGGAAAAA 300
Query 301 TAGGGAGCAGATGGAGGAGATACTGTTTCTTCTGTCACCATCTCGCTGGCCTGTTCAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGGGAGCAGATGGAGGAGATACTGTTTCTTCTGTCACCATCTCGCTGGCCTGTTCAGCT 360
Query 361 TCGGGAACCTTCCACATCCGAAGATGCTGAATTCGCTTCTATTTTGCGGACTCTCAAGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGGGAACCTTCCACATCCGAAGATGCTGAATTCGCTTCTATTTTGCGGACTCTCAAGGA 420
Query 421 CAGTTTTGATAACGCATTCACTGCTATGATTTCCTTCCAGACGAAGAATTCCGAGCGCAT 480
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CAATTTTGATAACGCATTCACTGCTATGATTTCCTTCCAGACGATGAATTCCGAGCGCAT 480
Query 481 ATTCAGCACAGTAATGACCTACATGCCTCAAGATTTCCGGGGAACGCTCATCAGACAGCA 540
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 ATTCAGCACAGTTATGACCTACATGCCTCAAGATTTCCGGGGGACGCTCATCAGACAGCA 540
Query 541 GAAGGAGAGGTCGGAGAGGAACAAACAGGCGGAGGTTGATGCGTTGGTCAGCTCTGGAGG 600
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 GAAGGAGAGGTCGGAGAGGAACAAACAGGCCGAGGTTGATGCGTTGGTTAGCTCTGGAGG 600
Query 601 GAGCATACGCGACACATATGCTCTTCTTTGGAAGCAGCAAATGGAGAGGAGGAGGCAGTT 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCATACGCGACACATACGCTCTTCTTTGGAAGCAGCAAATGGAGAGGAGGAGGCAGTT 660
Query 661 GGCTCAGCTAGGCTCTGCCACTGGTGTCTACAAAACCCTGGTCAAGTACTTGGTAGGGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGCTCAGCTAGGCTCTGCCACTGGTGTCTACAAAACCCTGGTCAAGTACTTGGTAGGGGT 720
Query 721 TCCACAGGTGTTGTTGGATTTTATTCGACAAATAAACGATGATGATGGGCCAATGGAAGA 780
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 721 TCCACAGGTGTTGTTGGATTTTATTCGACAAATAAATGATGACGATGGGCCAATGGAAGA 780
Query 781 ACAGCGAGAACGTTATGGACCCCCTCTATACAGTCTCACAAAAATGGT-GATCGCA-ATT 838
||||||||||||||| |||||||||||||||||||||||||||||| | | || || | |
Sbjct 781 ACAGCGAGAACGTTACGGACCCCCTCTATACAGTCTCACAAAAATGATAG-TCCCAGAAT 839
Query 839 CGGGTTTTCCTAACACTTCTGTGGGAAAGATATGATACCTTCAAACTGAGTAAAGACCAA 898
|||||||| || | ||| | | || | || || | |||||||||||||
Sbjct 840 A---TTTTCCTAG---TT-T-TGGTTTA--T-TGTTG--TT-AA-C-GAGTAAAGACCAA 883
Query 899 ATGAATCTCCTGTCTGAAGCTGCTATAGTCTACACTTCTGAGTTTGAAAGATTCGTCACA 958
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 884 ATGAATCTCCTGTCTGAAGCTGCTATAGTCTACACATCGGAGTTTGAAAGATTCGTCACA 943
Query 959 TTTATCAGCGATGTATTCGCCAATTCCCCCTTCTTTATTTCAGCTGATACAGCTGGCATA 1018
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 944 TTTATCAGCGATGTATTTGCCAATTCCCCCTTCTTCATTTCAGCAGATACAGCTGGCATA 1003
Query 1019 TTGTGG-TCAAGGGACAATGAGGAGTACAAGGAGATAATCGTTCAAGCTGGGAGAACCTA 1077
||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1004 TTG-GGCTCAAGGGATAATGAGGAGTACAAGGAGATAATCGTCCAAGCTGGGAGAACCTA 1062
Query 1078 TGAGATCTCATTGATGGTGGAATCTGAAAATTCGTATATTGCTTGGGATTTCTCTTTGAT 1137
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1063 TGAAATCTCATTGATGGTGGAATCCGAAAATTCGTATATTGCTTGGGATTTCTCCTTGAT 1122
Query 1138 GCAAGGCAAGATAAGCATG 1156
|||||||||||||||||||
Sbjct 1123 GCAAGGCAAGATAAGCATG 1141
Score = 274 bits (148), Expect = 1e-72
Identities = 156/160 (98%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1279 GGATATCGGATTTAGCGTGGAGTACATAAATGCTTCAGGGGAAAAGACTCTGATATTACC 1338
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 GGATATTGGATTTAGCGTGGAGTACATAAGTGCTTCAGGGGAAAAGACTCTGATATTACC 1200
Query 1339 TTACCGTCGGTATGAAGCTGACCAGGGCAACTTCTCTACGCTAATGGCTGGAAACTACAA 1398
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1201 TTACCGTCGGTATGAAGCTGATCAGGGCAACTTCTCTACGCTAATGGCTGGAAATTACAA 1260
Query 1399 ACTTGTTTGGGATAATTCATATTCAACTTTCTTCAAAAAG 1438
||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ACTTGTTTGGGATAATTCATATTCAACTTTCTTCAAAAAG 1300
Score = 250 bits (135), Expect = 3e-65
Identities = 162/174 (93%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 1435 AAAGACTCTTCGATATAAGGTGGATTGCATAGCACCAGTAGTGGAGCCGGATCCAGAGCC 1494
|||||||||||||||||| |||||||||||| |||| |||||||| | ||||||||
Sbjct 1420 AAAGACTCTTCGATATAAAGTGGATTGCATACCACCGGTAGTGGA----G--CCAGAGCC 1473
Query 1495 GGAGCCGTTAAACTGAAAGTGGAAGATGAAGGTGGATTTTACAGTCATGAACACTCATCA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GGAGCCGTTAAACTGAAAGTGGAAGATGAAGGTGGATTTTACAGTCATGAACACTCATCA 1533
Query 1555 TTTCTTTGTAAAACGATAAAACTCTGAACCCTTTGAAATACATCAATGGAACTT 1608
|||||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1534 TTTCTTTGTACAAGGATAAAACTCTGAACCCTTTGAAAGACATCAATGGAACTT 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5