BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01080.1 Length=555 Score E Sequences producing significant alignments: (Bits) Value Ahg942705 jgi|Araly1|942705|scaffold_603249.1 121 7e-27 Ahg925746 jgi|Araly1|925746|scaffold_201307.1 52.8 3e-06 > Ahg942705 jgi|Araly1|942705|scaffold_603249.1 Length=2035 Score = 121 bits (65), Expect = 7e-27 Identities = 141/177 (80%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 2 TGTTGCTTTGTTGGTAC-A-ATTATATCTCGAGAACCCTGCCTTTCGAAGCACCTAGAGA 59 ||||||| ||||||| | | ||| ||| | ||||||||||||||| ||| ||||||| Sbjct 484 TGTTGCTATGTTGGTTCAAGATT-TAT-TTGAGAACCCTGCCTTTAGAACCACCTAG-TT 540 Query 60 G-ATTTTTCATAAAACCAAAAGAGTGAAGAAGAACGGCACTATGATCCCGTCTCCACA-G 117 | ||| | ||| || ||||| |||||||| |||||| |||||||||||||| | | | Sbjct 541 GTATTATCCATGAATTTAAAAGCTTGAAGAAGGACGGCATTATGATCCCGTCTCTA-AGG 599 Query 118 AGCGGTGATTACCGTAGCTTTTTCAACTCTTCATCCCCGCTTCCTTTGATTATCGAG 174 ||||||||||||| | ||| ||||||| ||||||||| |||| | || ||| |||| Sbjct 600 AGCGGTGATTACCAAAACTTCTTCAACTTTTCATCCCCACTTCATCTGTTTACCGAG 656 > Ahg925746 jgi|Araly1|925746|scaffold_201307.1 Length=1549 Score = 52.8 bits (28), Expect = 3e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 221 TTAAAAGCTTGAAGAAGAACGGCATTAT 248 |||||||||||||||||||||||||||| Sbjct 904 TTAAAAGCTTGAAGAAGAACGGCATTAT 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20260617759 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5