BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01200.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079 1232 0.0
Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1 206 4e-52
> Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079
Length=795
Score = 1232 bits (667), Expect = 0.0
Identities = 762/806 (95%), Gaps = 13/806 (2%)
Strand=Plus/Plus
Query 1 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCA-AACACAAACTG 59
||||| ||||||| |||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 1 ATGTCGTCGTCGATGATGTACAGAGGAGTTGATATGTTTTCACCGG-AGAACACAAACTG 59
Query 60 GATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGGAGAACAAACGGTTCGAGAA 119
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 60 GATTTTTCAAGAAGTCAGAGAAGCCACATGGACGACGGAGGAGAACAAACGGTTCGAGAA 119
Query 120 AGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTC-CAAGATCGCAGATT 178
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| | ||
Sbjct 120 AGCTCTCGCTTATCTCGACGACAAAGACAATCTTGAGAGCTGG-CGCAAGATCGCCGCTT 178
Query 179 TGATTCCCGGCAAAACAGTAGCTGACGTCATTAAACGATACAAGGAGCTAGAGGATGATG 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGATTCCCGGAAAAACAGTAGCTGACGTCATTAAACGATACAAGGAGCTAGAGGATGATG 238
Query 239 TCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCG 298
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 239 TCAGCGACATCGAAGCCGGACTTATCCCCATTCCTGGCTACGGCGGCGACGCCTCCTCCG 298
Query 299 CTGCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCG 358
Query 359 TTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAA 418
| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 359 TAGGAGGAAAGAGGAGTTCGCCGGCGATGAGTGATTGTTTTAGGCCTCCGATGCCGGAAA 418
Query 419 AGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTT 478
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 419 AGGAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTACTATTTCTAATGGGTT 478
Query 479 TGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 479 TGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAAAAGCTTTGTGAAGACTCGGA 538
Query 539 CGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTA 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CGCCGACGCAAGTCGCTTCACACGCTCAAAAATATTTTCTTCGACAACTCACAGATGGTA 598
Query 599 AAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACG 658
||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 599 AAGACAAAAGACGATCAAGCATTCACGATATCACCACCGTTAACATCCCTGAGGCAGAAG 658
Query 659 CATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTACTCCAGCCAATTCTTTTG 718
|| || ||||||| | |||| | | ||||||||||||| ||||||||||||||||
Sbjct 659 CAACCACAACCGCT--G-CCGC--A---A-CACTCTCTCCTACACCAGCCAATTCTTTTG 709
Query 719 ACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATT 778
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 710 ACGTTTTCCTTCAGCCAAATCCTCATCACAGTTTCGCGTCTGCGTCTGAGTCTTGCTATT 769
Query 779 ATAATGCGTTTCCGCAGTGGAGTTAA 804
||||||||||||||||||||||||||
Sbjct 770 ATAATGCGTTTCCGCAGTGGAGTTAA 795
> Ahg482816 jgi|Araly1|482816|fgenesh2_kg.4__1876__AT2G38090.1
Length=1680
Score = 206 bits (111), Expect = 4e-52
Identities = 195/235 (83%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 421 GAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTG 480
|||||||||||||| ||||| ||||| || || |||||| || ||||||||||||| |
Sbjct 954 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTCTA 1013
Query 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGACGACTCGAAC 539
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||
Sbjct 1014 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACAACAAGAAC 1072
Query 540 GCCGACGCAAGTCGCTTCACACGCTCAGAAA-TATTTTCTT-CGACAACTCA-CAGATGG 596
||| ||||||||||| |||||||| ||| ||||| | | || ||| ||| | | |||
Sbjct 1073 GCCAACGCAAGTCGCAAGTCACGCTCA-AAAGTATTT-CATACGTCAAGTCAACGG-TGG 1129
Query 597 TAAAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGAC 651
||||||||| | ||||||||||| |||||||||||||| || |||||||| |||
Sbjct 1130 CAAAGACAAACGCCGATCAAGTATCCACGATATCACCACCGTCAACATCCCCGAC 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5