BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01260.2
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486949 jgi|Araly1|486949|fgenesh2_kg.6__83__AT5G01260.2 1816 0.0
> Ahg486949 jgi|Araly1|486949|fgenesh2_kg.6__83__AT5G01260.2
Length=1474
Score = 1816 bits (983), Expect = 0.0
Identities = 1164/1250 (93%), Gaps = 17/1250 (1%)
Strand=Plus/Plus
Query 12 AAACCAAAAA--C-TCTTCTTCTTCTGATGA--AAGATGATTGGCATTGGAAGAACCCTA 66
|||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 AAACCAAAAACTCTTCTTCTTCTTCTGATGATGAAGATGATTGGCATTGGAGGAACCCTA 60
Query 67 ACTTCTTCTTCTCCATCTAAGATCATTCTCGAAGATCTTCCTCCTGGAATTTATCGCTAT 126
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 61 ACTTCTTCTTCTCCATCTAAGATCATTCTCGAAGATTTTCCTCCTGGAATTTCTCGCTAT 120
Query 127 GGAACAGAGATAT-TCACTTCCGTTCCCAGGAAAACGTTCCATCACATCAAGTTTTTGCG 185
||||||||||| | || | | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 121 GGAACAGAGAT-TCTCCCATGTGTTACCAGGAAAACGTTTCATCACATCAAGTTTTTGCG 179
Query 186 TTTGGATTCTGCTCAGAGCAGCAGGATTCTTAAGCCGGTCCCGCTTCGTTCTTCGTCGAT 245
||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 180 TTTAGATTCTGCTCACAGCAGCAGGATTCTTAAGCCAATTCCGCTTCGTTCTTCGTCGAT 239
Query 246 TAAGGATTCGCAGGTAAACGTAGAAGATGAAGAAATCGAAGCTTC-TA-ACAAAACAGTT 303
||||||||| |||||||||||||||| || |||||||||||| || || | ||||| |||
Sbjct 240 TAAGGATTCTCAGGTAAACGTAGAAGCTGCAGAAATCGAAGC-TCATAGA-AAAACGGTT 297
Query 304 CGTGTAAGGTTCCAGTTGCGGAAAGAATGTGTCTTTGGGGAACATTTTTTCATTGTTGGT 363
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 298 CGTGTAAGGTTCCAGTTGCGGAAAGAGTGTGTCTTTGGGGAACATTTTTTCATTCTTGGT 357
Query 364 GATGATCCTGTGTTCGGTGGCCTTTGGGATCCAGAAACTGCCTTACCACTGAACTGGTCT 423
||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GATGATCCTTTGTTTGGTGGCCTTTGGGATCCAGAAACTGCTTTACCACTGAACTGGTCT 417
Query 424 GATGGCAATGTTTGGACTGTAGATTTGGATTTGCCTGTTGGAAGATTGGTTGAATTTAAG 483
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 418 GATGGCAATGTTTGGACTGTAGATTTGGATTTGCCTGTTGGAAGATTGGTCGAATTCAAG 477
Query 484 CTTT-TATTGAAGGCACAGACAGGGGAGATTTTGTGGCAACCAGGTCCAAACCGGGCTCT 542
||| || | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 -TTTATACTAAAGGCACAGACAGGGGAGATTTTGTGGCAACCAGGTCCGAACCGGGCTCT 536
Query 543 TGAAACCTGGGAAACTAACAAAACTATCAGAATATGTGAAGACTGGGATAATGCTGATCT 602
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGAAACTTGGGAAACTAACAAAACTATCAGAATATGTGAAGACTGGGATAATGCTGATCT 596
Query 603 TCAAATGATGATTGAGGAAGATTTTGTGCCTTACACCAATATTTCGTCGATCGGTTCAGA 662
|||||||||||||||||||||||||||||||||||||||| |||| || | | || |||
Sbjct 597 TCAAATGATGATTGAGGAAGATTTTGTGCCTTACACCAATGTTTCATCAAACAGTGAAGA 656
Query 663 AGATGAGGATGAAGTGCTTGGTAGTGTACAACAAAACTCTTCAGTAGTAGCTGTAGAGAA 722
||| |||||||||||||||| || || ||||||||| |||||||||||| |||||||||
Sbjct 657 AGAAGAGGATGAAGTGCTTGTTACTGCACAACAAAAAGCTTCAGTAGTAGTTGTAGAGAA 716
Query 723 TGCAGGATACGTGAGTGATGAGTCTGCCCAGAATTCGAGTTTC-AGTATCCAAAGTGAGA 781
||||||||| || |||||||||||||| | |||||||||||| | ||||||||||||||
Sbjct 717 TGCAGGATATGTAAGTGATGAGTCTGCGGAAAATTCGAGTTTCGA-TATCCAAAGTGAGA 775
Query 782 AAACTATGGAACCTTCGAATGGAGCTTTGACTGCTCGGGAGGTGATCAAAGAAGCCATGT 841
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 AAACTATGGAACCTTCTAATGGAGCTTTGACTGCTCGGGAGGTGACCAAAGAAGCCATGT 835
Query 842 TTACTGAGGAAGAAAGTCCAGTTTTGGTTCCTGGATTGATTCCTCTGTCTGACTTGGATA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTACTGAGGAAGAAAGTCCAGTTTTGGTTCCTGGATTGATTCCTCTGTCTGACTTGGATA 895
Query 902 ATGAACAAGTGGAAGTTATTAATGAAGGTAAAGCAGAAACGTTCCCGGAGGTAGATaaga 961
||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 ATGAAGAAGTGGCTGTTATTAACGAAGGTAAAGCAGAAACGTTCCCGGAGGTAGATAAGA 955
Query 962 agcaagaacccaaagcagaaagaaacaagaaagcaaaagtaaaagcGATTTCATTATTCG 1021
||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 AGCCAGAAACCAAAGCAGAAAGAAACAAGAAAGCAAAAGTAAAAGCGATTTCGTTATTCG 1015
Query 1022 AGAAATCGGAGCAAGAAGCAGTGAAAAGTGTAGAGCAGAGGCAATACAAT-GCAGTAGAG 1080
||||| |||| ||||||||||||||||||||||| |||||||| |||||| | |||||||
Sbjct 1016 AGAAACCGGAACAAGAAGCAGTGAAAAGTGTAGAACAGAGGCAGTACAATAG-AGTAGAG 1074
Query 1081 GAAGAGCAGCAGCGGCTAGAGACAGAGCCGCTTGGAACGCCGGATGTGCTTTTTGAGAAT 1140
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1075 GAAGAGCAGCAGCGGCTAGAGACAGAGCCGCTTGGAACACCGGAAGTGCTTTTAGAGAAT 1134
Query 1141 GATATCCAATGGGGACGCAGAACACTTTACAAGCTTCTAAGCAACTTTAGACTTTTCTAA 1200
|||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1135 GATATCCAGTGGGGACGCAGAACGCTTTACAAGCTTCTAAGCAACTTTGGACTTTTCTAA 1194
Query 1201 ACTCGACTAAGTTTTGAGTGCATACATACATCGGCAAAAGAGCCTCAAGA 1250
|||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1195 ACTCGACTAAGTTTCGAGTGCATACATACATCAGCAAAAGAGCCTCAAGA 1244
Score = 252 bits (136), Expect = 7e-66
Identities = 160/172 (93%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 1370 TGTTGTGTTGTCTTTGTATATATGTAATGATCAAATGGTTTTGGTAAAGAGAAAGATGAA 1429
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1303 TGTTGTGTTGTCTTTGTAGATATGTAATGATCAAATGGTTTTGGTAAAGAGAGAGATGAA 1362
Query 1430 GAAAGAATGGACTGTTAGTGTTAGCTGTTAAGTACATAGGACAGTATGTAGCATCTGGAT 1489
||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 1363 GAAAGAAAGGAGTGTTAGTGTTAATTGTTAAGTACATAGGACAGTATGTATCATGTGGAT 1422
Query 1490 CCTATTCTCCCATATAATTGTATTGTTGCTACATAATAatgatgatgatgat 1541
|| ||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 1423 CCAATTCTCCCAAATAATTGTATTGTTGTTACATAATGATGATGATGATGAT 1474
Score = 87.9 bits (47), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1279 AAAAACTGCTCTTAAAAGGTAGGCTACCTTCTTCTTCTATGCTCATCTTTACGTTTTGT 1337
|||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||
Sbjct 1244 AAAAACTGCTCTTAAAAGGTAGGCTACCTTCTTCTTCTCTGCTCACCTTTATGTTATGT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5