BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01340.1 Length=1274 Score E Sequences producing significant alignments: (Bits) Value Ahg349470 jgi|Araly1|349470|fgenesh1_pg.C_scaffold_6000063 1471 0.0 > Ahg349470 jgi|Araly1|349470|fgenesh1_pg.C_scaffold_6000063 Length=936 Score = 1471 bits (796), Expect = 0.0 Identities = 886/930 (95%), Gaps = 4/930 (0%) Strand=Plus/Plus Query 162 GGCGACG-AGAACGGAATCGAAGAAGCAGATTCCGCCGTACATGAAAGCAGTCTCAGGCT 220 |||| || || || ||||||| ||| |||||||||||||||||||||||||||||||| | Sbjct 9 GGCGGCGAAG-ACTGAATCGAGGAACCAGATTCCGCCGTACATGAAAGCAGTCTCAGGTT 67 Query 221 CACTAGGCGGAGTGGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 280 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 CACTAGGCGGAGTCGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 127 Query 281 TCCAGCTAGATCGCGTCGGCGCTTACAAAGGAATCGCTCACTGTGGTTCGAA-GGTGGTT 339 ||||||||||||||||||| || |||||||||||||| ||||||||||| || ||||||| Sbjct 128 TCCAGCTAGATCGCGTCGGAGCGTACAAAGGAATCGCGCACTGTGGTTC-AACGGTGGTT 186 Query 340 CGCACCGAAGGAGTTCGTGCTCTCTGGAAAGGCTTAACACCGTTCGCTACTCATCTCACG 399 ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 187 CGCACCGAAGGAGTTCGTGCTCTTTGGAAAGGTTTAACGCCGTTCGCTACTCATCTCACG 246 Query 400 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCCTTTAAGGATTCC 459 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 247 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCGTTTAAGGATTCA 306 Query 460 GAGACCGGAAAGGTCAGCAATCGTGGCCGTTTTCTTTCCGGATTCGGTGCCGGTGTTCTT 519 ||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||| Sbjct 307 GAGACCGGAAAAGTCAGTAATCGGGGCCGTTTGCTTTCCGGATTCGGCGCCGGCGTTCTT 366 Query 520 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAGCAGAAA 579 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 367 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAACAGAAA 426 Query 580 GGATTGAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 639 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GGATTAAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 486 Query 640 AGAGAAGAAAGCATACTTGGTTTATGGTCAGGTGCAGCACCGACGGTTATGCGAAACGGA 699 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 487 AGAGAAGAAAGCATACTTGGGTTATGGTCAGGTGCAGCACCAACGGTTATGCGAAACGGC 546 Query 700 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCGTTTGACATACTCTTGTGGAACAAA 759 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 547 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCATTTGACATACTTTTGTGGAACAAA 606 Query 760 CACGAAGGTGACGGTAAAATCTTGCAGCCATGGCAGTCAATGATCTCAGGGTTTTTAGCT 819 || ||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 607 CATGAAGGCGATGGTAAAGTCTTGCAGCCATGGCAGTCCATGATCTCAGGGTTTTTAGCT 666 Query 820 GGAACCGCAGGTCCGTTCTGCACAGGACCGTTTGATGTGGTGAAAACGAGGTTGATGGCT 879 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 667 GGAACCGCAGGTCCGTTCTGCACGGGACCATTTGATGTGGTGAAAACGAGGTTGATGGCT 726 Query 880 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACG 939 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACA 786 Query 940 ATTTATGCAGAGGAAGGATTAGTGGCCTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 999 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 787 ATTTATGCAGAGGAAGGATTAGTGGCTTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 846 Query 1000 ATTCCTCCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAG 1059 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 ATCCCACCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAA 906 Query 1060 ATGAGATATCTTCGGAATGCTCCTTTATAG 1089 ||||||||||||||||||||| |||||||| Sbjct 907 ATGAGATATCTTCGGAATGCTACTTTATAG 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47615523333 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5