BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01390.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1 1940 0.0
Ahg928542 jgi|Araly1|928542|scaffold_300999.1 320 2e-86
> Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1
Length=1255
Score = 1940 bits (1050), Expect = 0.0
Identities = 1176/1233 (95%), Gaps = 24/1233 (2%)
Strand=Plus/Plus
Query 14 AACAAGTCGAAGAGAGTAGTCATCGACCCC----T--AATAAAATCCAGTGAAGAAGAAG 67
||||||||| | |||| |||| |||||||| | |||||||||||||||||||||||
Sbjct 1 AACAAGTCG-A-AGAG-AGTCGTCGACCCCTAAATAAAATAAAATCCAGTGAAGAAGAAG 57
Query 68 ATTGAGTGAGTgagagagagagagagaga-gaAGATGGGGGTTGATTTCTATAAGGTTCT 126
| || ||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 58 A-AGATTGAGTGAGAGAGAGAGATA-AAATCCAGATGGGGGTTGATTTCTATAAGGTTCT 115
Query 127 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 175
Query 187 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCCGAAGCTAAATTCAAGCA 246
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 176 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAACAAGCCGAAGCTAAATTCAAGCA 235
Query 247 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 295
Query 307 CGGAGAAGAAGGTTTAAACCAA---GCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGG 363
|||||||||||||||||||||| ||||||||||| |||||||||||| || |||||
Sbjct 296 CGGAGAAGAAGGTTTAAACCAAGCGGCCCCACCTCCTGGCGCCGGTGGT---TACCCTGG 352
Query 364 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGATATCTTCTC 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 353 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGACATCTTCTC 412
Query 424 CGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACC 483
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 413 CGAGTTCTTTGGTTTCACAAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCTGGACC 472
Query 484 TTCTGGCTTTAGGTATGGCGATGATATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 543
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 TTCT---TTTAGGTATGGCGATGACATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 529
Query 544 AGAAGCCTCCATTCCTTCTAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 603
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGAAGCCTCCATTCCTGCAAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 589
Query 604 GGAGGATTTGTATAAAGGTGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 663
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGAGGATTTGTATAAAGGAGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 649
Query 664 TTCCGGGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTGGAA 723
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 650 TACCGGGAGGCCAACACCGGTTGAGGAGATTTTGACGATAGAAATCAAACCCGGTTGGAA 709
Query 724 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAATGAGCATCGTGGAGTCATACCATC 783
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 710 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAACGAGCATCGTGGGGTCATTCCATC 769
Query 784 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 829
Query 844 TCTTGTGGTAATGCAAAAGATTTCTCTAGTGGATGCTCTCACAGGTTACACCGCACAGGT 903
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 830 TCTTGTGGTGATGCAAAAGATATCTCTAGTGGAAGCTCTCACAGGTTACACCGCACAGGT 889
Query 904 CACTACTCTTGACGGAAGAACCTTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 963
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 890 CACTACTCTTGACGGAAGAACCCTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 949
Query 964 CGAAGAGGTGGTGAAAGGAGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1023
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CGAAGAGGTGGTGAAAGGCGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1009
Query 1024 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1069
Query 1084 GATCAAGCGGATGTTATCACCTTGAATGTCCAAAGATTGAAGCATCTCGTTTCAGTTTTT 1143
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1070 GATCAAGCGGATGTTATCACCTTGAATGTCCAA-GATTGAAGCATCTCGTTTCAGTTTTT 1128
Query 1144 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCTTATGGttttttta 1203
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1129 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCCTAAGGGTTTTTTA 1188
Query 1204 atttattttg-gttgcattttggtaaggttttt 1235
|||||||| ||||||||||||||| ||||||
Sbjct 1189 -TTTATTTTTTGTTGCATTTTGGTAAAGTTTTT 1220
> Ahg928542 jgi|Araly1|928542|scaffold_300999.1
Length=1016
Score = 320 bits (173), Expect = 2e-86
Identities = 300/359 (84%), Gaps = 17/359 (5%)
Strand=Plus/Plus
Query 101 ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC 158
|||||||| |||| | || ||||||||| | || |||| ||| || || |||||||| |
Sbjct 21 ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-CGCGAAAGACGACGA-C 77
Query 159 TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC 217
|| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 78 TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAATAAC 137
Query 218 AAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 277
||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 AAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 197
Query 278 CCTCAGAAA-CGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAA-A--CCAAGCCCC 333
||||| ||| ||||||||||| || |||||||||||||||||| ||| | ||| | ||
Sbjct 198 CCTCA-AAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTCTAACAAGCCAGGTTCC 256
Query 334 ACCTCCCGGCGCCGGTGGTGGCTATCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTT 393
||||| || ||||| || | | || || || ||||| | || ||||| ||||||||
Sbjct 257 GCCTCCTGGTGCCGGCGG-GTTT-TCG-GGTGGTTCAGATGGAGGGGCTTCGTTCCGGTT 313
Query 394 CAATCC-CAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCC-TTC 450
||| | ||||||||| ||||| |||||||||||||||||||| ||||| || || |||
Sbjct 314 CAA-CGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCACAAGACCCTTC 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5