BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01390.1 Length=1344 Score E Sequences producing significant alignments: (Bits) Value Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1 1940 0.0 Ahg928542 jgi|Araly1|928542|scaffold_300999.1 320 2e-86 > Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1 Length=1255 Score = 1940 bits (1050), Expect = 0.0 Identities = 1176/1233 (95%), Gaps = 24/1233 (2%) Strand=Plus/Plus Query 14 AACAAGTCGAAGAGAGTAGTCATCGACCCC----T--AATAAAATCCAGTGAAGAAGAAG 67 ||||||||| | |||| |||| |||||||| | ||||||||||||||||||||||| Sbjct 1 AACAAGTCG-A-AGAG-AGTCGTCGACCCCTAAATAAAATAAAATCCAGTGAAGAAGAAG 57 Query 68 ATTGAGTGAGTgagagagagagagagaga-gaAGATGGGGGTTGATTTCTATAAGGTTCT 126 | || ||||||||||||||||| | | | |||||||||||||||||||||||||||| Sbjct 58 A-AGATTGAGTGAGAGAGAGAGATA-AAATCCAGATGGGGGTTGATTTCTATAAGGTTCT 115 Query 127 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 175 Query 187 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCCGAAGCTAAATTCAAGCA 246 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 176 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAACAAGCCGAAGCTAAATTCAAGCA 235 Query 247 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 295 Query 307 CGGAGAAGAAGGTTTAAACCAA---GCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGG 363 |||||||||||||||||||||| ||||||||||| |||||||||||| || ||||| Sbjct 296 CGGAGAAGAAGGTTTAAACCAAGCGGCCCCACCTCCTGGCGCCGGTGGT---TACCCTGG 352 Query 364 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGATATCTTCTC 423 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 353 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGACATCTTCTC 412 Query 424 CGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACC 483 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 413 CGAGTTCTTTGGTTTCACAAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCTGGACC 472 Query 484 TTCTGGCTTTAGGTATGGCGATGATATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 543 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 473 TTCT---TTTAGGTATGGCGATGACATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 529 Query 544 AGAAGCCTCCATTCCTTCTAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 603 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 530 AGAAGCCTCCATTCCTGCAAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 589 Query 604 GGAGGATTTGTATAAAGGTGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 663 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GGAGGATTTGTATAAAGGAGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 649 Query 664 TTCCGGGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTGGAA 723 | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 650 TACCGGGAGGCCAACACCGGTTGAGGAGATTTTGACGATAGAAATCAAACCCGGTTGGAA 709 Query 724 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAATGAGCATCGTGGAGTCATACCATC 783 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 710 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAACGAGCATCGTGGGGTCATTCCATC 769 Query 784 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 829 Query 844 TCTTGTGGTAATGCAAAAGATTTCTCTAGTGGATGCTCTCACAGGTTACACCGCACAGGT 903 ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 830 TCTTGTGGTGATGCAAAAGATATCTCTAGTGGAAGCTCTCACAGGTTACACCGCACAGGT 889 Query 904 CACTACTCTTGACGGAAGAACCTTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 963 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 890 CACTACTCTTGACGGAAGAACCCTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 949 Query 964 CGAAGAGGTGGTGAAAGGAGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1023 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 950 CGAAGAGGTGGTGAAAGGCGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1009 Query 1024 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1069 Query 1084 GATCAAGCGGATGTTATCACCTTGAATGTCCAAAGATTGAAGCATCTCGTTTCAGTTTTT 1143 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1070 GATCAAGCGGATGTTATCACCTTGAATGTCCAA-GATTGAAGCATCTCGTTTCAGTTTTT 1128 Query 1144 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCTTATGGttttttta 1203 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1129 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCCTAAGGGTTTTTTA 1188 Query 1204 atttattttg-gttgcattttggtaaggttttt 1235 |||||||| ||||||||||||||| |||||| Sbjct 1189 -TTTATTTTTTGTTGCATTTTGGTAAAGTTTTT 1220 > Ahg928542 jgi|Araly1|928542|scaffold_300999.1 Length=1016 Score = 320 bits (173), Expect = 2e-86 Identities = 300/359 (84%), Gaps = 17/359 (5%) Strand=Plus/Plus Query 101 ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC 158 |||||||| |||| | || ||||||||| | || |||| ||| || || |||||||| | Sbjct 21 ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-CGCGAAAGACGACGA-C 77 Query 159 TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC 217 || ||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct 78 TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAATAAC 137 Query 218 AAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 277 ||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 138 AAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 197 Query 278 CCTCAGAAA-CGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAA-A--CCAAGCCCC 333 ||||| ||| ||||||||||| || |||||||||||||||||| ||| | ||| | || Sbjct 198 CCTCA-AAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTCTAACAAGCCAGGTTCC 256 Query 334 ACCTCCCGGCGCCGGTGGTGGCTATCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTT 393 ||||| || ||||| || | | || || || ||||| | || ||||| |||||||| Sbjct 257 GCCTCCTGGTGCCGGCGG-GTTT-TCG-GGTGGTTCAGATGGAGGGGCTTCGTTCCGGTT 313 Query 394 CAATCC-CAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCC-TTC 450 ||| | ||||||||| ||||| |||||||||||||||||||| ||||| || || ||| Sbjct 314 CAA-CGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCACAAGACCCTTC 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50284127523 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5