BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01390.1

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1          1940    0.0  
  Ahg928542 jgi|Araly1|928542|scaffold_300999.1                        320    2e-86


> Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1
Length=1255

 Score = 1940 bits (1050),  Expect = 0.0
 Identities = 1176/1233 (95%), Gaps = 24/1233 (2%)
 Strand=Plus/Plus

Query  14    AACAAGTCGAAGAGAGTAGTCATCGACCCC----T--AATAAAATCCAGTGAAGAAGAAG  67
             ||||||||| | |||| |||| ||||||||    |  |||||||||||||||||||||||
Sbjct  1     AACAAGTCG-A-AGAG-AGTCGTCGACCCCTAAATAAAATAAAATCCAGTGAAGAAGAAG  57

Query  68    ATTGAGTGAGTgagagagagagagagaga-gaAGATGGGGGTTGATTTCTATAAGGTTCT  126
             |  || ||||||||||||||||| | | |   ||||||||||||||||||||||||||||
Sbjct  58    A-AGATTGAGTGAGAGAGAGAGATA-AAATCCAGATGGGGGTTGATTTCTATAAGGTTCT  115

Query  127   TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT  186
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  116   TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT  175

Query  187   GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCCGAAGCTAAATTCAAGCA  246
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  176   GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAACAAGCCGAAGCTAAATTCAAGCA  235

Query  247   GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA  306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236   GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA  295

Query  307   CGGAGAAGAAGGTTTAAACCAA---GCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGG  363
             ||||||||||||||||||||||   ||||||||||| ||||||||||||   || |||||
Sbjct  296   CGGAGAAGAAGGTTTAAACCAAGCGGCCCCACCTCCTGGCGCCGGTGGT---TACCCTGG  352

Query  364   AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGATATCTTCTC  423
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  353   AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGACATCTTCTC  412

Query  424   CGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACC  483
             |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  413   CGAGTTCTTTGGTTTCACAAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCTGGACC  472

Query  484   TTCTGGCTTTAGGTATGGCGATGATATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG  543
             ||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  473   TTCT---TTTAGGTATGGCGATGACATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG  529

Query  544   AGAAGCCTCCATTCCTTCTAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT  603
             |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  530   AGAAGCCTCCATTCCTGCAAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT  589

Query  604   GGAGGATTTGTATAAAGGTGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC  663
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  590   GGAGGATTTGTATAAAGGAGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC  649

Query  664   TTCCGGGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTGGAA  723
             | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  650   TACCGGGAGGCCAACACCGGTTGAGGAGATTTTGACGATAGAAATCAAACCCGGTTGGAA  709

Query  724   AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAATGAGCATCGTGGAGTCATACCATC  783
             |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct  710   AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAACGAGCATCGTGGGGTCATTCCATC  769

Query  784   CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA  843
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770   CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA  829

Query  844   TCTTGTGGTAATGCAAAAGATTTCTCTAGTGGATGCTCTCACAGGTTACACCGCACAGGT  903
             ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  830   TCTTGTGGTGATGCAAAAGATATCTCTAGTGGAAGCTCTCACAGGTTACACCGCACAGGT  889

Query  904   CACTACTCTTGACGGAAGAACCTTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA  963
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  890   CACTACTCTTGACGGAAGAACCCTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA  949

Query  964   CGAAGAGGTGGTGAAAGGAGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA  1023
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  950   CGAAGAGGTGGTGAAAGGCGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA  1009

Query  1024  CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG  1083
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1010  CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG  1069

Query  1084  GATCAAGCGGATGTTATCACCTTGAATGTCCAAAGATTGAAGCATCTCGTTTCAGTTTTT  1143
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1070  GATCAAGCGGATGTTATCACCTTGAATGTCCAA-GATTGAAGCATCTCGTTTCAGTTTTT  1128

Query  1144  TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCTTATGGttttttta  1203
             |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct  1129  TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCCTAAGGGTTTTTTA  1188

Query  1204  atttattttg-gttgcattttggtaaggttttt  1235
              ||||||||  ||||||||||||||| ||||||
Sbjct  1189  -TTTATTTTTTGTTGCATTTTGGTAAAGTTTTT  1220


> Ahg928542 jgi|Araly1|928542|scaffold_300999.1
Length=1016

 Score =  320 bits (173),  Expect = 2e-86
 Identities = 300/359 (84%), Gaps = 17/359 (5%)
 Strand=Plus/Plus

Query  101  ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC  158
            |||||||| |||| | || ||||||||| | || |||| |||  || || |||||||| |
Sbjct  21   ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-CGCGAAAGACGACGA-C  77

Query  159  TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC  217
            || ||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct  78   TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAATAAC  137

Query  218  AAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT  277
            ||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  AAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT  197

Query  278  CCTCAGAAA-CGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAA-A--CCAAGCCCC  333
            ||||| ||| ||||||||||| || |||||||||||||||||| ||| |  ||| |  ||
Sbjct  198  CCTCA-AAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTCTAACAAGCCAGGTTCC  256

Query  334  ACCTCCCGGCGCCGGTGGTGGCTATCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTT  393
             ||||| || ||||| || |  | ||  || || ||||| |  || ||||| ||||||||
Sbjct  257  GCCTCCTGGTGCCGGCGG-GTTT-TCG-GGTGGTTCAGATGGAGGGGCTTCGTTCCGGTT  313

Query  394  CAATCC-CAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCC-TTC  450
            ||| |  ||||||||| ||||| |||||||||||||||||||| ||||| || || |||
Sbjct  314  CAA-CGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCACAAGACCCTTC  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50284127523


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5