BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01410.1 Length=1297 Score E Sequences producing significant alignments: (Bits) Value Ahg939527 jgi|Araly1|939527|scaffold_600071.1 1683 0.0 > Ahg939527 jgi|Araly1|939527|scaffold_600071.1 Length=988 Score = 1683 bits (911), Expect = 0.0 Identities = 962/987 (97%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 92 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTGTACGGTAACGGTGCG 151 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTCTACGGTAACGGTGCG 62 Query 152 ATAACGGAGGCGAAGAAATCTCCCTTCTCCGTGAAGGTCGGTTTGGCTCAGATGCTCCGT 211 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 63 ATAACGGAGGCTAAGAAATCTCCCTTCTCCGTTAAGGTCGGTTTGGCTCAGATGCTCCGT 122 Query 212 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAGGCTGGT 271 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 123 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAAGCTGGT 182 Query 272 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATCCGCGCTCAAGGAGGCGTC 331 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 183 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATTCGTGCTCAAGGAGGCGTT 242 Query 332 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAAGCCGTTACGATTCCGGTG 391 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 243 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAGGCCGTTACGATTCCGGTG 302 Query 392 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAGATCCTTGAAGCAATTGGAATC 451 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 303 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAAATCCTTGAAGCAATTGGAATC 362 Query 452 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 422 Query 512 CATAATTTCCGGATCCCGTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTCTGAGGAGG 571 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 423 CATAATTTCCGGATCCCTTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTTTGAGGAGG 482 Query 572 ATCCGTGAAGGTGCGGCGATGATTAGGACCAAAGGTGAAGCTGGAACCGGTAACATTATT 631 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 483 ATCCGTGAAGGTGCGGCGATGATAAGGACCAAAGGTGAAGCTGGAACTGGTAACATTATT 542 Query 632 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 602 Query 692 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCTCCGTACGATCTCGTGATGCAG 751 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 603 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCCCCGTACGATCTCGTGATGCAG 662 Query 752 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCCGGTGGAGTGGCTACTCCG 811 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 663 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCAGGTGGAGTGGCTACTCCG 722 Query 812 GCTGATGCAGCTCTCATGATGCAGCTTGGATGTGATGGTGTCTTTGTTGGTTCTGGTATC 871 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 723 GCTGATGCAGCTCTCATGATGCAGCTCGGATGTGATGGTGTCTTTGTAGGTTCTGGTATC 782 Query 872 TTCAAGAGCGGTGACCCAGCTCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 931 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 783 TTCAAGAGCGGTGACCCAGCGCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 842 Query 932 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGGCTTGGAGAAGCCATGGTTGGGATC 991 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 843 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGACTTGGAGAAGCCATGGTTGGGATC 902 Query 992 AATCTCAACGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAA-ATA 1050 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 903 AATCTCAATGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAACA-A 961 Query 1051 AAAGGTAAAATATCTCAGACGAAATGG 1077 ||||||||||| | |||||| |||||| Sbjct 962 AAAGGTAAAATTTGTCAGACTAAATGG 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48492350424 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5