BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01520.1 Length=1306 Score E Sequences producing significant alignments: (Bits) Value Ahg486924 jgi|Araly1|486924|fgenesh2_kg.6__58__AT5G01520.1 1703 0.0 > Ahg486924 jgi|Araly1|486924|fgenesh2_kg.6__58__AT5G01520.1 Length=1253 Score = 1703 bits (922), Expect = 0.0 Identities = 1141/1242 (92%), Gaps = 34/1242 (3%) Strand=Plus/Plus Query 63 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAATCctctctttctctct 122 |||||||||||||||||||||||||||||||||||||||||||| || |||| || Sbjct 38 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAA-----TC-ATCTC-CT 90 Query 123 ctctctcctccttcttcttcttcttcCTGTCGCTGCCTTGTGGTTGAGTGAGCaaaaaaa 182 ||||| |||| || |||||||||||||||||| ||||||||||||||||| ||| | Sbjct 91 -TCTCT-CTCC-TC--CTTCTTCTTCCTGTCGCTACCTTGTGGTTGAGTGAG-TAAATAT 144 Query 183 CTCAAAACCCTCCATGGAAATGGGAGAGAGAATCAATTCGAGTTGTTGTTAGGGGGTTTG 242 || ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 145 CTGGAAACCATCCATGGAAATGGGAGAGAGAATCAATTCTTGTTGTTGTTAGAGGGTTTG 204 Query 243 CGATATTTTAGGCTTCTGTCGGTGATCTCGACCaaaaaaaaTAAACAAAGGAGCTAG-TA 301 ||||||||||||||||||||||||||||||| | ||||| |||||||||||||| | || Sbjct 205 CGATATTTTAGGCTTCTGTCGGTGATCTCGA-C--AAAAATTAAACAAAGGAGCT-GCTA 260 Query 302 GGGTTCTGTTT-TCTCTAT--CACTCGGAAGGAAGCTGGTTTATGTCAAAAC-TTTGTTC 357 |||| | ||| ||||| | || |||||||||||||||||||||| || | | | || Sbjct 261 -GGTT-T-TTTCTCTCTCTCCCATTCGGAAGGAAGCTGGTTTATGTTGAATCGTCT-TTG 316 Query 358 TTCGGAAAATGCGAAAATCGTTCAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 417 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 317 TTCGGAAAATGCGAAAATCGTTTAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 376 Query 418 TCGCCAACACTCTGGCGTCAGAGTACCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 477 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 377 TCGCCAACACTCTGGCATCAGAGTATCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 436 Query 478 GATTATCTTACAGCCCGGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 537 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 GATTATCTTACAGCCCCGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 496 Query 538 ATTTCGCTGGCGCTTTGGGCTTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 597 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATTTCGCTGGCACTTTGGGATTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 556 Query 598 AGACCACAATGTCGCTACATGAACGCAAAACTAGTATCAGAGAATTCTATGATGTGTTGT 657 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 557 AGACCACAATGTCGCTACATGAACGCAAAGCTAGTATCAGAGACTTCTATGATGTGTTGT 616 Query 658 TTCCTTCGCTATTGCAACTTCATGGAGGGATCACCGATGTAGAAGAAAGGAAACAGAAGG 717 |||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||| Sbjct 617 TTCCTTCGCTATTGCAACTTCACGGAGGGATAACCGATCTAGAAGAAAGGAAGCAGAAGG 676 Query 718 AGATATGCGACAAAAGATACCGTAAAAAGGACAGAACAGATAAAGGAAAGATGTCGGAGA 777 |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 677 AGATATGCGACAAACGATACCGGAAAAAGGACAGAACAGAGAAAGGAAAGATGTCGGAGA 736 Query 778 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATCTGCTTGGAGATTCGAAACAAAGTTGTTC 837 ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 737 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATTTGCTTGGAGATTCAAAATAAAGTTGTTC 796 Query 838 TTCCTACGTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCACGGTCAC 897 | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 797 TCCCTACTTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCAAGGTCAC 856 Query 898 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTATGGATAT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 857 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTGTGGATAT 916 Query 958 ACACTTGTAGCGCCGAGATTGCAGATTTACCAGCGATTTACAAGGAGAATCTGAAGAGGT 1017 |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 917 ACACTTCTAGCGCCGAGATTGCAGATTTACCGGCGATTTACAAGGACAATCTGAAGAGGT 976 Query 1018 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTCTGATCCAAATCTTGTCCCTTATG 1077 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 977 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTGTGATCCAAATCTAGTCCCTTATG 1036 Query 1078 CTCCTCTTCCTCGGTGAAC-ATTACATTCTCTCTGTTTCTTGTTATGCACATAGCAATTT 1136 ||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||||| Sbjct 1037 CTCCTCTTCCTCGGTGAACGAACACATTCTCTTTATTTCTTGTTATGCACATAGCAATTT 1096 Query 1137 CTTTCAAACAAATTTCATCTATTTATGTCCACTTTGTATATAATATTTATGTGTTTTTAG 1196 || ||||| | |||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 1097 CTATCAAA-A--TTTCATCTATTTGTGTCCACTTTGTATATAATATTTATGTGTTTCCAG 1153 Query 1197 TTGGTTTTTCATCTT-TCTA-TAGTCTCAGATTTGGGTTTGTATATAACAACCATTGGTT 1254 || | | ||| | || | ||||| |||||||||||||||||||||||| |||||| Sbjct 1154 CCC-TTGTGCTTCTAGT-TAATCGTCTCTGATTTGGGTTTGTATATAACAACCGTTGGTT 1211 Query 1255 ATTGACATTTAGATCAAAAATTCGATATCATATTTGCTGATT 1296 ||||||||||||||| |||||||||||||| ||||||| ||| Sbjct 1212 ATTGACATTTAGATCCAAAATTCGATATCACATTTGCTTATT 1253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48835456677 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5