BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01530.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486922 jgi|Araly1|486922|fgenesh2_kg.6__56__AT5G01530.1 1434 0.0
> Ahg486922 jgi|Araly1|486922|fgenesh2_kg.6__56__AT5G01530.1
Length=1094
Score = 1434 bits (776), Expect = 0.0
Identities = 1026/1137 (90%), Gaps = 56/1137 (5%)
Strand=Plus/Plus
Query 1 TGGATTTGTGAATCGATCCAACGGTCATAATCGTCTTTCCAAGATAGGC-CAGCTCC--- 56
|||||||||| ||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct 1 TGGATTTGTGTATCAATCCAACGGTCGTAATCGTCTTTCCAAGATA-GCTCAGCTCCAAA 59
Query 57 -G-----AAACTCACCTCCACGCATCTATAATCGTGTATCAAGAAACGGATCTTTCTTCT 110
| ||| || |||||||||||||||||||||| |||||||||| | | | | |
Sbjct 60 TGAAAAAAAAATCCCCTCCACGCATCTATAATCGTGGATCAAGAAAC---T-GTGCAT-T 114
Query 111 CTATCTTCTGAATATCACAAAACCCAATTAGCCGGAGATGGCCGCAACATCCGCCGCTGC 170
|| || || ||| | || ||||||||||||||| || |||||||||||
Sbjct 115 CT-TC-TC----TAT---------C--TT-GCCGGAGATGGCCGCCACTTCCGCCGCTGC 156
Query 171 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTGGCTCCCGGTATCCATCCCGGTTCAGG 230
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 157 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTTGCTCCCGGTATCCATCCCGGTTCAAG 216
Query 231 TCGGTTCACAGCCGTGTTCGGTTTCGGAAAGAAGAAGGCAGCTCCCAAAAAGAGT--G-C 287
||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||| | |
Sbjct 217 TCGGTTCACGGCCCTGTTCAGTTTGGGAAAGAAGAAGGCAGCTCCCAAAAAGAGTGCGTC 276
Query 288 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGACTG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 277 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGAATG 336
Query 348 GCTTGATGGTTCCTTGGTTGGAGATTACGGTTTTGATCCCTTCGGTTTAGGCAAACCGGC 407
||| |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 337 GCTCGATGGTTCGTTGGTTGGAGATTACGGTTTTGATCCCTTTGGTTTGGGTAAACCGGC 396
Query 408 CGAGTATCTTCAATTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 467
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CGAGTATCTCCAGTTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 456
Query 468 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 516
Query 528 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAACTCATCCACGGACGGTGGGC 587
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 517 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAGCTGATCCACGGACGGTGGGC 576
Query 588 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAATGGCTTACCGGCGTTACATGGCAAGA 647
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 577 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAGTGGCTCACCGGCGTTACTTGGCAAGA 636
Query 648 CGCTGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCTTTCTC 707
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 637 CGCCGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCGTTCTC 696
Query 708 GATCTCGACATTGATATGGATCGAGGTGTTAGTGATCGGCTACATCGAGTTCCAGCGCAA 767
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 697 GATCTCGACATTGATATGGATCGAGGTGTTAGTGGTCGGCTACATCGAGTTCCAGCGCAA 756
Query 768 CGCCGAGCTTGATTCGGAGAAGCGTTTATACCCCGGAGGCAAGTTCTTTGACCCGCTAGG 827
|| |||||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||
Sbjct 757 TGCTGAGCTTGACTCGGAGAAGCGTTTGTACCCGGGAGGCAAGTACTTCGACCCGCTAGG 816
Query 828 TTTAGCGGCTGACCCGGAGAAGACTGCTCAACTTCAGTTAGCTGAGATCAAGCATGCACG 887
||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 817 TTTGGCGGCTGACCCGGAGAAGAAGGCTCAACTTCAATTAGCCGAGATCAAGCACGCACG 876
Query 888 TCTTGCGATGGTCGCCTTCTTGGGATTCGCGGTTCAAGCGGCTGCAACAGGTAAAGGTCC 947
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 877 TCTTGCGATGGTCGCCTTCTTGGGATTTGCGGTTCAAGCGGCTGCAACGGGTAAAGGTCC 936
Query 948 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 996
Query 1008 CTCCTCATCTTAAAATCATTATCATGTGAGATTCTATTTGTAACTTATGTAAAAACAGAG 1067
|||||| || | ||| | | | |||||| |||||||| |||| ||||||||
Sbjct 997 CTCCTC--CT------C-TTA--A-G--A--TTCTATGTGTAACTTTTGTATAAACAGAG 1040
Query 1068 CTATGATGATACTGAATCGACTTTGGGCTTTTGCTTGTTTGGTTTATTTACATGTTT 1124
||||||| | ||||||||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 1041 CTATGAT-A--CTGAATCGAGTTTGGGCTTTTGCTCGTTTGGTTTATCTACTTGTTT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5