BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01640.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939499 jgi|Araly1|939499|scaffold_600043.1 928 0.0
> Ahg939499 jgi|Araly1|939499|scaffold_600043.1
Length=694
Score = 928 bits (502), Expect = 0.0
Identities = 633/692 (91%), Gaps = 25/692 (4%)
Strand=Plus/Plus
Query 100 AGAACAAA-ATCGAATGGTGTCAACAAATCCCCCTGTTCTTCCAATTTCCACCACCGCAA 158
|||| ||| ||||||||||||| ||| |||||||||| ||||| |||||| ||| | | |
Sbjct 8 AGAA-AAATATCGAATGGTGTCCACACATCCCCCTGTGCTTCCGATTTCCTCCA-C-C-A 63
Query 159 CAGACACCACCAATCAGCCTCCGATTGTAACCGCTGTGGTGGAATCGCAACCTCCAGTCG 218
| ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 64 C---CACCA-C--TCAGCCTCCGATTGTAACCGCTGTGGTGGAATCGCAACCTCCAGCCG 117
Query 219 TCCGTGCATTTGTCAACGGTGTGACCGAGACGGTCTGTGGTGGTCTATCTCGTAGCCGTC 278
||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||
Sbjct 118 TCCGTGCATTTGTCAACGGCGTAACCGAGACGGTCCGTGGTGGCCTATCTCGTAGCCGTC 177
Query 279 CGTGGTCAGAGCTCCTCGATCGATCCGCTTTCACAAAGCCTGACTCTCTCTCCGAGGCCG 338
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 CGTGGTCAGAGCTCCTCGATCGATCCGCTTTCACCAAGCCTGACTCTCTCTCCGAGGCCG 237
Query 339 GGACGCGATTCCGGAAAAATTCCTCTTATTTCAGGGTGAATTACGTTTGCATTGTCGCTC 398
||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||
Sbjct 238 CGACGCGATTCCGGAAGAATTCTTCCTATTTCAGGGTGAATTACGTCTGCATCGTCGCTC 297
Query 399 TGATCCTTGGTTTCTCTCTTCTCGCCCACCCATTCTCTCTCATCCTCCTCCTATGTCTCG 458
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 298 TGATCCTCGGTTTCTCTCTTCTCGCCCACCCATTCTCGCTCATCCTCCTCCTATGCCTCG 357
Query 459 CCGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTATCCTCTTCG 518
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 CCGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTGTCCTCTTCG 417
Query 519 GCCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTAATCCTCTCCACGATCGCAGTGA 578
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 418 GCCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTGATCCTCTCCACGATCGCCGTGA 477
Query 579 TCTTCTTCACAAGCGTCGGATCTGTATTGATATCCGCTCTCATGATCGGAATAGCAACAA 638
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 478 TCTTCTTCACAAGCGTCGGATCTGTACTGATATCCGCTCTCATGATCGGAGTAGCAACGG 537
Query 639 TCTGTGTCCATGGCGCCTTTAGAGCTCCCGATGATCTCTTCCTCGACGAACAAGAT-CAT 697
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 538 TCTGCGTCCATGGCGCCTTTAGAGCTCCCGATGATCTCTTCCTGGACGAGCAAGATGC-T 596
Query 698 GCCGCC-TCCGGATTCCTCTCATTCATCGGTGTTCCCGCGATCCCCTCTGTAGCACCCTC 756
|||||| || ||||||||||||||||||||||| ||| || || |||||||||||
Sbjct 597 GCCGCCGTC-GGATTCCTCTCATTCATCGGTGT-CCC-CG--CC-----GTAGCACCCTC 646
Query 757 TGCCTCCTCAGCGGCTTCCCCCGTGTAAATTA 788
|||||||||||| | |||||||| ||| |||
Sbjct 647 CGCCTCCTCAGCGCCATCCCCCGTATAA-TTA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5