BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01650.2

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486907 jgi|Araly1|486907|fgenesh2_kg.6__41__AT5G01650.1           564    3e-160


> Ahg486907 jgi|Araly1|486907|fgenesh2_kg.6__41__AT5G01650.1
Length=519

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 321/329 (98%), Gaps = 0/329 (0%)
 Strand=Plus/Plus

Query  63   GAAGAAGAAGAAGAAAATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT  122
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    GAAGAAGAAGAAGAAAATGCCGTGTCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT  60

Query  123  CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCGAAAATCATCGGCAAGCC  182
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCCAAAATCATCGGCAAGCC  120

Query  183  TGAGAACTATGTGATGATTGTCTTGAAAGGCTCAGTGCCTATGTCATTTGGCGGGACCGA  242
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct  121  TGAGAACTATGTGATGATTGTCTTGAAAGGCTCTGTGCCTATGTCATTTGGTGGGACCGA  180

Query  243  GGATCCTGCAGCTTATGGTGAATTAGTTTCTATCGGTGGCCTTAATGCGGATGTGAACAA  302
            ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  181  GGATCCTGCAGCTTATGGTGAATTAGTCTCTATTGGTGGCCTTAATGCGGATGTGAACAA  240

Query  303  GAAGCTAAGCGCTGCTGTTTCCGCCATTCTTGAGACTAAGCTATCGGTGCCCAAGTCTCG  362
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  241  GAAGCTAAGCGCTGCTGTTTCCGCCATTCTGGAGACTAAGCTATCTGTGCCCAAGTCTCG  300

Query  363  ATTCTTCCTCAAGTTTTATGACACCAAGG  391
            |||||||||||||||||||||||||||||
Sbjct  301  ATTCTTCCTCAAGTTTTATGACACCAAGG  329


 Score =  303 bits (164),  Expect = 8e-82
 Identities = 183/192 (95%), Gaps = 2/192 (1%)
 Strand=Plus/Plus

Query  477  GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGGTA-GGTGATTAGTGTG  535
            |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||
Sbjct  329  GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGG-ACTGTGATTAGTGTG  387

Query  536  ATTGTCTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTTTGAACTACTTCGTATT  595
            ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  388  ATTGTTTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTCTGAACTATTTCGTATT  447

Query  596  GTAAACATATCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA  655
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  GTAAACATGTCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA  507

Query  656  TGCTACAACTTA  667
            | |||| |||||
Sbjct  508  TTCTACGACTTA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5