BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01650.2 Length=667 Score E Sequences producing significant alignments: (Bits) Value Ahg486907 jgi|Araly1|486907|fgenesh2_kg.6__41__AT5G01650.1 564 3e-160 > Ahg486907 jgi|Araly1|486907|fgenesh2_kg.6__41__AT5G01650.1 Length=519 Score = 564 bits (305), Expect = 3e-160 Identities = 321/329 (98%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 63 GAAGAAGAAGAAGAAAATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT 122 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGAAGAAGAAGAAAATGCCGTGTCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT 60 Query 123 CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCGAAAATCATCGGCAAGCC 182 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCCAAAATCATCGGCAAGCC 120 Query 183 TGAGAACTATGTGATGATTGTCTTGAAAGGCTCAGTGCCTATGTCATTTGGCGGGACCGA 242 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 121 TGAGAACTATGTGATGATTGTCTTGAAAGGCTCTGTGCCTATGTCATTTGGTGGGACCGA 180 Query 243 GGATCCTGCAGCTTATGGTGAATTAGTTTCTATCGGTGGCCTTAATGCGGATGTGAACAA 302 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 181 GGATCCTGCAGCTTATGGTGAATTAGTCTCTATTGGTGGCCTTAATGCGGATGTGAACAA 240 Query 303 GAAGCTAAGCGCTGCTGTTTCCGCCATTCTTGAGACTAAGCTATCGGTGCCCAAGTCTCG 362 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 241 GAAGCTAAGCGCTGCTGTTTCCGCCATTCTGGAGACTAAGCTATCTGTGCCCAAGTCTCG 300 Query 363 ATTCTTCCTCAAGTTTTATGACACCAAGG 391 ||||||||||||||||||||||||||||| Sbjct 301 ATTCTTCCTCAAGTTTTATGACACCAAGG 329 Score = 303 bits (164), Expect = 8e-82 Identities = 183/192 (95%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 477 GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGGTA-GGTGATTAGTGTG 535 |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 329 GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGG-ACTGTGATTAGTGTG 387 Query 536 ATTGTCTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTTTGAACTACTTCGTATT 595 ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 388 ATTGTTTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTCTGAACTATTTCGTATT 447 Query 596 GTAAACATATCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA 655 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 GTAAACATGTCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA 507 Query 656 TGCTACAACTTA 667 | |||| ||||| Sbjct 508 TTCTACGACTTA 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24474912714 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5