BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01740.1 Length=724 Score E Sequences producing significant alignments: (Bits) Value Ahg486893 jgi|Araly1|486893|fgenesh2_kg.6__27__AT5G01740.1 966 0.0 > Ahg486893 jgi|Araly1|486893|fgenesh2_kg.6__27__AT5G01740.1 Length=647 Score = 966 bits (523), Expect = 0.0 Identities = 598/633 (94%), Gaps = 10/633 (2%) Strand=Plus/Plus Query 1 ACACAACACAAATATAAGACTTTTCACTTGAAAACCTATCCTGTTCTAAGTCTG-AAGAG 59 |||| ||||||| ||||||| |||||||| |||||||||||||||||||||||| || | Sbjct 1 ACACTACACAAAAATAAGACCTTTCACTTCAAAACCTATCCTGTTCTAAGTCTGAAATA- 59 Query 60 AGAAATATACAAATGGAAGCACACAACGTAGAGATATCAACAAGACTTACCCCAGAAATG 119 | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 60 ATAAATTTACAAATGGAAGCACACAACGTAGAGATATCGACAAGACTTACCCCAGAAATG 119 Query 120 AAAAACCAGGGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGCGACACTTCTACG 179 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 120 AAAAACCAGAGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGAGACACCTCGACG 179 Query 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACGATTGTCAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACCATTGTCAA 239 Query 240 CACATGATGAGGCTGCTAACAGGGGAACCTCCGAGGCAGGTTTCGTTCAGGTTTGAGCCA 299 |||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 240 CACATGATGAGGCTACTAACAGGGGAACCACGGAGCCAGGTTTCGTTCAGGTTTGAGCCA 299 Query 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359 Query 360 TCACGCGTGTACTGGGTTCACGTGTGGAAATTGAAAGACGGAGTGGTCACTGAGCTAAGA 419 |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 360 TCACACGTGTACTGGGTTCACGTGTGGAAGTTGAAAGACGGAGTGGTCACGGAGCTAAGA 419 Query 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAGTAGGATGGGAC 479 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAATAGGATGGGAC 479 Query 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGTTCGTTGCCT 539 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGATCGTTGCCT 539 Query 540 AGCTTGTTGTTAGCTATTTAACTA-ATGACTAAAGAGTAAATTAATTAAGTAACACACAG 598 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| | Sbjct 540 AGCTTGCTGTTAGCTATTTAAGTATATGACTAAAGAGTAAATTAA----GTAACACA--G 593 Query 599 TTTGTCTCTGG-GGGTTTCTATACTTTTATGAT 630 ||||| ||||| ||||||||||||||||||||| Sbjct 594 TTTGTGTCTGGTGGGTTTCTATACTTTTATGAT 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26647918983 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5