BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01750.2
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486891 jgi|Araly1|486891|fgenesh2_kg.6__25__AT5G01750.2 1099 0.0
Ahg916356 jgi|Araly1|916356|Al_scaffold_0008_1107 490 1e-137
> Ahg486891 jgi|Araly1|486891|fgenesh2_kg.6__25__AT5G01750.2
Length=858
Score = 1099 bits (595), Expect = 0.0
Identities = 722/782 (92%), Gaps = 13/782 (2%)
Strand=Plus/Plus
Query 147 CCTGAAACTTATCTTCACGGCATAATaagaccaagaagaaaaagaaaacattaatttcaa 206
||||||||||||||||||| || || ||||||| || |||||| ||| | | |||||||
Sbjct 68 CCTGAAACTTATCTTCACGACACAACGAGACCAA-AAAAAAAAG-AAA-A-T-ATTTCAA 122
Query 207 ccaaagcaaaacagagaga-aaaaaaTAGAGAG---AGTGAATCAATTTCGGTGGAGAAA 262
|||||||||||| | | | ||||||||||||| ||||||||||||| || |||||||
Sbjct 123 TCAAAGCAAAACA-A-AAACAAAAAATAGAGAGATCAGTGAATCAATTTTGGAGGAGAAA 180
Query 263 GAGAAGAATGGAGCAGCCGTACGTGTACGCATACCCGCAAGGTAGTGGCCCCTCGGGAGC 322
|| |||||||||||||||||||||||| |||||||| ||||| | || || |||||| |
Sbjct 181 GAAAAGAATGGAGCAGCCGTACGTGTATGCATACCCACAAGGCACAGGGCCTTCGGGACC 240
Query 323 TCCGACTCCACAAGCCGGAGGAGTGGTAGTGGATCCAAAGTACTGCGCTCCTTACCCTAT 382
|||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 241 TCCGCCTCCACAAGCCGGAGGAGTGATAGTGGATCCAAGGTACTGCGCTCCTTACCCTGT 300
Query 383 AGATATGGCGATCGTACGGAAGATGATGTCGTTAACGGACGGCAA-TTTCGTGATAACGG 441
|||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||
Sbjct 301 AGATCTGGCGATCGTACGGAAGATGATGAAGTTGACGGACGGCAACTTT-GTGATAACGG 359
Query 442 ACGTCAACGGAAACCTGCTGTTCAAGGTGAAGGAACCGGTGTTTGGTCTCCACGACAAGA 501
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 ACGTCAACGGAAACCTGCTGTTCAAGGTGAAGGAACCGGTGTTTGGTCTTCACGACAAGA 419
Query 502 GGGTCTTGCTGGATGGTTCTGGTACTCCGGTCGTCACTTTGAGAGAAAAGATGGTGAGCA 561
|| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 420 GGATCTTGCTGGATGGTTCTGGTAATCCGGTCGTGACTTTGAGAGAAAAGATGGTGAGCA 479
Query 562 TGCATGACAGGTGGCAAGTGTTTAGAGGAGGGAGTACGGATCAGCGTGATCTGCTGTACA 621
|||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 480 TGCATGACAGATGGCAAGTGTTTAGAGGAGGGAGCACAGAGCAGCGTGATCTGCTTTACA 539
Query 622 CGGTGAAAAGATCGTCGATGCTTCAGCTAAAGACCAAACTCGATGTGTTTTTGGGACACA 681
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 540 CGGTGAAGAGATCGTCGATGCTTCAGCTAAAGACAAAACTTGATGTGTTTTTGGGACACA 599
Query 682 ACAAAGATGAGAAGAGATGTGATTTCAGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTG 741
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 ACAAAGATGAGAAGAGATGTGACTTCAGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTG 659
Query 742 TTGTTTACGCCGGCGAATCTGACGCCATTGTTGCCCAAATGCACAGGAAGCACACGGTGC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 TTGTTTACGCCGGCGAATCTGACGCCATTGTTGCCCAAATGCACAGGAAGCACACAGTGC 719
Query 802 AGAGCGTATTCTTGGGAAAAGACAACTTCTCGGTGACTGTTTATCCAAACGTCGATTATG 861
|||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 720 AGAGCGTATTTTTGGGAAAAGACAATTTCTCAGTGACGGTTTATCCAAACGTCGATTATG 779
Query 862 CCTTCATCGCCTCTCTCGTCGTCATTCTCGATGACGTCAACCGCGAAGACCGCGCCGCCT 921
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 780 CCTTCATCGCCTCTCTCGTCGTCATTCTTGATGACGTCAACCGTGAAGACCGCACCGCCT 839
Query 922 GA 923
||
Sbjct 840 GA 841
Score = 75.0 bits (40), Expect = 1e-12
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 1 tttttttGGTTTGTTCTTAGAGGAAATCTTTATCTTGGAATCTT 44
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTT-GTTTGTTCTTAGAGGAAATCTTTATCTTGGAATCTT 43
> Ahg916356 jgi|Araly1|916356|Al_scaffold_0008_1107
Length=417
Score = 490 bits (265), Expect = 1e-137
Identities = 399/456 (88%), Gaps = 39/456 (9%)
Strand=Plus/Plus
Query 468 GTGAAGGAACCGGTGTTTGGTCTCCACGACAAGAGGGTCTTGCTGGATGGTTCTGGTACT 527
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 1 GTGAAGGAACCGGTGTTTGGTCTTCACGACAAGAGGATCTTGCTGGATGGTTCTGGTAAT 60
Query 528 CCGGTCGTCACTTTGAGAGAAAAGATGGTGAGCATGCATGACAGGTGGCAAGTGTTTAGA 587
||| |||| |||||||||| || | || || || | | |||||||||||||||
Sbjct 61 CCGATCGTGACTTTGAGAG--AA-A-----AG-AT-CA-G--A--TGGCAAGTGTTTAGA 105
Query 588 GGAGGGAGTACGGATCAGCGTGATCTGCTGTACACGGTGAAAAGATCGTCGATGCTTCAG 647
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 106 GGAGGGAGCACGGAGCAGCGTGATCTGCTTTACACGGTGAAAAGATCGTCGATGCTTCAG 165
Query 648 CTAAAGACCAAACTCGATGTGTTTTTGGGACACAACAAAGATGAGAAGAGATGTGATTTC 707
|||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 166 CTAAAGACAAAACTTGATGTGTTTTTGGGGCACAACAAAGATGAGAAAAGATGTGATTTC 225
Query 708 AGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTGTTGTTTACGCCGGCGAATCTGACGCC 767
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 226 AGAGTCAAAGGGAGTTGGCTCGAGCATTCTTGTGTTGTTTTCGCCGGCGAATCTGACGCC 285
Query 768 ATTGTTGCCCAAATGCACAGGAAGCACACGGTGCAGAGCGTATTCTTGGGAAAAGACAAC 827
||||||||||||| || | | | | | |||||||||||||||
Sbjct 286 ATTGTTGCCCAAA-GC---G-----------T--A-----T-T-CTTGGGAAAAGACAAT 321
Query 828 TTCTCGGTGACTGTTTATCCAAACGTCGATTATGCCTTCATCGCCTCTCTCGTCGTCATT 887
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTCTCAGTGACTGTTTATCCAAACGTCGATTATGCCTTCATCGCCTCTCTCGTCGTCATT 381
Query 888 CTCGATGACGTCAACCGCGAAGACCGCGCCGCCTGA 923
||||||||||||||||| ||||||||| ||||||||
Sbjct 382 CTCGATGACGTCAACCGTGAAGACCGCACCGCCTGA 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5