BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01760.1 Length=1847 Score E Sequences producing significant alignments: (Bits) Value Ahg494915 jgi|Araly1|494915|fgenesh2_kg.8__731__AT5G01760.1 2158 0.0 Ahg486890 jgi|Araly1|486890|fgenesh2_kg.6__24__AT5G01760.1 2128 0.0 > Ahg494915 jgi|Araly1|494915|fgenesh2_kg.8__731__AT5G01760.1 Length=1786 Score = 2158 bits (1168), Expect = 0.0 Identities = 1523/1686 (90%), Gaps = 57/1686 (3%) Strand=Plus/Plus Query 1 CTTGTGGAATAAAGGCA-TTTTCGACGAGAATTTC--T-G---T-AGAGATGAGGCCTTC 52 ||||||||||||||| | |||| |||||||||||| | | | ||| |||||||| || Sbjct 1 CTTGTGGAATAAAGGTATTTTTAGACGAGAATTTCAGTGGAATTCAGAAATGAGGCCATC 60 Query 53 TTGTGCTTCTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGT 112 | | ||||||| ||||| |||||||||||||||||||| | ||| || ||||||||||| Sbjct 61 -T-T-CTTCTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGT 117 Query 113 GGCGGTGGACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 172 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GGCGGTGGACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 177 Query 173 CATCTGCGATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAA 232 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 178 CATCTGCGATTCCCTCAATTCTAATCGCTGGCAATGCAAAGATGCTATCAAAGCCGTGAA 237 Query 233 GAGAAGATTGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGC 292 |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 238 GAGAAGATTGCAACACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGC 297 Query 293 AATGCTGAAGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGA 352 ||||||||| || || ||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 298 AATGCTGAAAAATTGTGGTGACTTTGTTCATTCTCATATCACTGAGAAACATCTTCTTGA 357 Query 353 AGATATGGTTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGA 411 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct 358 AGATCTGGTTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGC 416 Query 412 TTTTGTTGGATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACA 471 | ||||||||||||||||||||||||||| |||||||| |||| ||| |||| ||||||| Sbjct 417 TATTGTTGGATACATGGAATGAAGCATTCGGTGGAGTTCCTTGTAAATACCCCCACTACA 476 Query 472 ACTGGGCATACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAG 531 | ||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| Sbjct 477 ATTGGGCATACCAAGAGCTTAAACGGTGTGGGGTGACATTCCCACAACGTTCCAAAGAAG 536 Query 532 CACCCCTGATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTC--C-TC-T--TCTT 585 ||||| ||||||||| ||||||||||||| ||||||| |||||||| | || | |||| Sbjct 537 CACCCATGATGCTTGCACCACCACCTCCAATGACACATTCTTCTTCTTCTTCTTCATCTT 596 Query 586 CTATGAATTTAATGTCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAA 645 ||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 597 CTATGAATTTACTGTCCATTGGTTCATTTAGAAGGCTCGACGAAGCTATGGCTACAGAAA 656 Query 646 TTGAGAGCTTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 705 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TTGAGGGCCTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 716 Query 706 ACATGGTTCAAGCCGTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTT 764 |||||||||||||||| ||||| |||||||||||||| | |||| ||||||||||||||| Sbjct 717 ACATGGTTCAAGCCGTGAATCCATCTGATAAATCAGC-TATAAATGATGAGCTAATAGTT 775 Query 765 GATCTAGTAGAGCAGTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACT 824 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 776 GATCTAGTAGAGCAGTCCAGATCTAATCAAAAGAAACTAATCCAGATGCTCACTACAACT 835 Query 825 GCGGACGAGGATGTTCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTC 884 || || ||||||||| |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 836 GCTGATGAGGATGTTATGGCACGTGGGCTCGAGCTGAATGACTCTTTACAGGTAGTGCTC 895 Query 885 GCTAGACACGACGCTATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAG 944 || ||||| ||||||||||| ||||| || ||||||||| ||||| | ||||||||||| Sbjct 896 GCGAGACATGACGCTATTGCATCTGGTGTATCTCTTCCTATGTTG--G-AGGCCCCAGAG 952 Query 945 CCAAGAGAGACAAGCTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGAC 1004 | |||||||| |||||||||||| || ||| |||||||||||||||| || Sbjct 953 --A-------CAAGCTCTGCCCTCAAGACTTATGATGCAGCTGCTCTTGAGTCTG---AC 1000 Query 1005 TCTGAGTCTTCTTCATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTT 1064 ||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct 1001 TCTGAGTCTTCTTCATCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATT 1057 Query 1065 AAAGATGACTTTATACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGAT 1124 |||||||||||||| ||| |||||| |||||| |||||||||| |||| |||||||||| Sbjct 1058 AAAGATGACTTTATGCAGTTAGCCAGAAGGCACGCTCTATTAAGTGCCGAACACAGCGAT 1117 Query 1125 GAAGAAGAAGAAACATTGCTTCTAGGCAACGACAATGAAAAAACAGCAGAAGCAGAAGCC 1184 |||||||||||||||||||||||| |||| ||||||||||||| ||| ||| |||||||| Sbjct 1118 GAAGAAGAAGAAACATTGCTTCTACGCAATGACAATGAAAAAATAGCGGAAACAGAAGCC 1177 Query 1185 AAGACACAGTGCAAAGATCTAGCTTTGTTCGacacaacaacaacaacaacCACCAAGTCA 1244 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1178 AAGACACAGTGCAAAAATCTAGCTTTGTTCGACACAACAACAACAACCACCACCGAGTCA 1237 Query 1245 GAGCAGGATATTATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCA 1304 |||||||| ||||| |||||||||||||||||||||||||| |||||||| || |||||| Sbjct 1238 GAGCAGGACATTATAGAACTTCTCAGCCTAACTCTGTCAACGACTGCTCTACCGTCCCCA 1297 Query 1305 CAAACGCAACCGCA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAAT 1352 ||||||||||| || | | | || ||| || | |||||||||||||||||||||| Sbjct 1298 CAAACGCAACCTCAAATGCAACCACAAACGCAGCCTCCATCGTTTTTTGCTGATGATAAT 1357 Query 1353 ATTCTTATGAACAGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCA 1412 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1358 ATTCTTATGAACAACTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCA 1417 Query 1413 AAAATGACTCAGTTTGCTCCATC-AGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCA 1471 ||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||| Sbjct 1418 AAAATGACTCAGTTTGCACCATCGAG-ACCTCAGTTTCAGCCATGGCCTCTACAGCAGCA 1476 Query 1472 ACAACCGTATTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAA 1531 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1477 ACAACCGTTTTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAATAGTAA 1536 Query 1532 TGACACAACATTCTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCA 1591 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1537 TGACACAACATTGTGGAGCCAAGGAGGCAATGAGAATAAGGTCTTTGAGAGAAACTTGCA 1596 Query 1592 AGT-CTCAAACTCATTTCCTGCTAGAGCCACGGGCACATCCGGTGCTGC-TACTGCGGCT 1649 | | || |||||| || || |||||||||||||| |||||||||||||| | ||| | || Sbjct 1597 A-TACTTAAACTCCTTCCCCGCTAGAGCCACGGGGACATCCGGTGCTGCCT-CTGTGCCT 1654 Query 1650 ACAGTG 1655 || ||| Sbjct 1655 ACGGTG 1660 > Ahg486890 jgi|Araly1|486890|fgenesh2_kg.6__24__AT5G01760.1 Length=1762 Score = 2128 bits (1152), Expect = 0.0 Identities = 1499/1658 (90%), Gaps = 58/1658 (3%) Strand=Plus/Plus Query 2 TTGTGGAATAAAGGCA-TTTTCGACGAGAATTTCTGTAGAGATGAGGCCTTCTTGTGCTT 60 |||||||||||||||| |||| |||||||| || ||| | |||||||| || | | ||| Sbjct 1 TTGTGGAATAAAGGCATTTTTAGACGAGAA-TT-TGT-G-TATGAGGCCATC-T-T-CTT 53 Query 61 CTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGTGGCGGTGG 120 |||| ||||| |||||||||||||||||||| | ||| || |||||||||||| |||||| Sbjct 54 CTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGTGACGGTGG 113 Query 121 ACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 ACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 173 Query 181 ATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAAGAGAAGAT 240 |||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||| Sbjct 174 ATTCCCTCAATTCTAATTGCTGGCAATGCAAATATGCGATCAAAGCCGTGAAGAGAAGAT 233 Query 241 TGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGCAATGCTGA 300 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 234 TGCAGCACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGCAATGCACA 293 Query 301 AGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGAAGATATGG 360 | || || |||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 294 AAAATTGTGGTGACTTTGTGCATTCTCATATCACTAAGAAACATCTTCTTGAAGATATGG 353 Query 361 TTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGATTTTGTTG 419 ||||| |||||||||||||||||||||||||||||||||||| || ||||| | |||||| Sbjct 354 TTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGCTATTGTTG 412 Query 420 GATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACAACTGGGCA 479 ||||| |||||||||||||||||||||||| |||| ||| ||||||||||||| ||||| Sbjct 413 GATACTTGGAATGAAGCATTCAGTGGAGTTCCTTGTAAATACCCTCACTACAATTGGGCG 472 Query 480 TACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAGCACCCCTG 539 ||||||||||||||| ||||||| |||| ||| ||||| ||||| ||||||||||||||| Sbjct 473 TACCAAGAGCTTAAAGGGTGTGGGGTGACATTCCCACAGCGTTCCAAAGAAGCACCCCTG 532 Query 540 ATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTCCTCTTCTTCTATGAATTTAATG 599 ||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||| Sbjct 533 ATGCTTGCACCACCACCTCCAGTGACACA---TTCTTCTTCATCTTCTATGAATTTAATG 589 Query 600 TCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAATTGAGAGCTTAAGC 659 ||||| || |||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 590 TCCATCGGTTCATTTAGAAGGCTCGACGAAACTATGGCTACAGAAATTGAGGGCCTAAGC 649 Query 660 TTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATGACATGGTTCAAGCC 719 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 650 TTATCAAGCCTTGAATCCATGAGAAATGTGATTGATCTTGTGAACGACATGGTTCAAGCA 709 Query 720 GTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 778 || ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 710 GTGAATCCATCTGATAAATCAG-CTGTAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 768 Query 779 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCGGACGAGGATGT 838 |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 769 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCTCATGAGGATGT 828 Query 839 TCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCTAGACACGACGC 898 | || ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 829 TATGACACGTGGGCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCGAGACATGACGC 888 Query 899 TATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAGCCAAGAGAGACAAG 958 |||||| ||||| |||||||||||| ||||| | ||||||||||| | |||| Sbjct 889 TATTGCATCTGGTGTCTCTCTTCCTATGTTG--G-AGGCCCCAGAG--A-------CAAG 936 Query 959 CTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGACTCTGAGTCTTCTTC 1018 |||| |||||||||||| || || || |||||||||||||| |||||||||||||||| Sbjct 937 CTCTGCCCTCAAGACTTATGATGTTGTTGCTCTTGAGTCTG---ACTCTGAGTCTTCTTC 993 Query 1019 ATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTTAAAGATGACTTTAT 1078 || || |||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 994 GTCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATTAAAGATGACTTTAT 1050 Query 1079 ACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGATGAAGAAGAAGAAAC 1138 ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| Sbjct 1051 GCAGCTAGCCAAAAGGCACACTCTATTAAGTGCCGAACACAGCGATGAAGAAGAAGAAAC 1110 Query 1139 ATTGCTTCTAGGCAAC-GACAATGAAAAAACAGC-AGAAGCAGAAGCCAAGACACAGTGC 1196 |||||||||||||| | ||||||||||||| ||| | || |||||||||||||| ||||| Sbjct 1111 ATTGCTTCTAGGCA-CTGACAATGAAAAAATAGCGAAAA-CAGAAGCCAAGACAAAGTGC 1168 Query 1197 AAAGATCTAGCTTTGTTCGacacaacaacaacaacaacCACCAAGTCAGAGCAGGATATT 1256 ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct 1169 AAAAATCTAGCTTTGTTCGACACAACAACAACAAC--C-ACCAAGTCAGAGCAGGACATT 1225 Query 1257 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCACAAACGCAACCG 1316 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1226 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTACCCTCCCCACAAACGCAACCT 1285 Query 1317 CA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAATATTCTTATGAAC 1364 || | | | || ||| || | ||| ||||||| |||||||||||||||||||||| Sbjct 1286 CAAATGCAACCACAAACGCAACCTCCATCTTTTTTTGTTGATGATAATATTCTTATGAAC 1345 Query 1365 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCAAAAATGACTCAG 1424 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1346 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCAAAAATGACTCAG 1405 Query 1425 TTTGCTCCATCAGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGTATT-C 1483 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1406 TTTGCTCCATCGGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGT-TTAC 1464 Query 1484 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAATGACACAACATT 1543 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 1465 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGTCAAGTAAATAGTAATGAAACAACATT 1524 Query 1544 CTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCAAGT-CTCAAACT 1602 |||||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||| Sbjct 1525 GTGGAGCCAAGGATGCAATGAGAATAAGGTTTTTGAGAGAAACTTGCAA-TACTCAAACT 1583 Query 1603 CATTTCCTGCTAGAGCCACG-GGCACATCCGGTGCTGC 1639 | || || ||||||||||| || |||||||||||||| Sbjct 1584 CCTTCCCCGCTAGAGCCACAAGG-ACATCCGGTGCTGC 1620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69362336145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5