BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01780.2 Length=1486 Score E Sequences producing significant alignments: (Bits) Value Ahg939482 jgi|Araly1|939482|scaffold_600026.1 1136 0.0 > Ahg939482 jgi|Araly1|939482|scaffold_600026.1 Length=1215 Score = 1136 bits (615), Expect = 0.0 Identities = 950/1100 (86%), Gaps = 70/1100 (6%) Strand=Plus/Plus Query 155 TTCTTCTCCTCACTCTCCGATCCCAAAGACG-CATACTGCATCGCTTGACTCACTTAATG 213 ||||||| ||||||||||||| | ||||||| || ||| ||||| |||| ||||| ||| Sbjct 40 TTCTTCTACTCACTCTCCGATTCGAAAGACGCCA-ACTACATCGTTTGAATCACTCAATA 98 Query 214 ATTATGAAGAGCAATTTCCACCACTTACTGGTGGCTCT---AAGACGAA-G--------- 260 ||||||| ||||||||||||||||||||||| |||||| |||| ||| | Sbjct 99 ATTATGACGAGCAATTTCCACCACTTACTGGCGGCTCTCAGAAGAAGAAGGTTTCACCAA 158 Query 261 -AAGT----TTTATCTTGGTTCTACCAATCCTTCTACTCCATGTCAAAGTTCACAGCTTC 315 |||| || |||||||||||||||||||||||| | ||||| ||||||||||| ||| Sbjct 159 CAAGTGAGGTTGATCTTGGTTCTACCAATCCTTCTAGTTCATGTAAAAGTTCACAGTTTC 218 Query 316 AAAACTGGACAAGCGGTAAGGATGCTTTGTCTTTGCAGAGGAATTTGGGATGTAAGAATA 375 |||| ||| | | |||| | | | | | ||| | ||||| ||| || Sbjct 219 AAAATTGG---A-C---AAGG--G----G----T--A-A-GAA-TAGGGAT-CAAG-GTA 254 Query 376 GGAGGAGGAGACGGGCTTCACGGTTTTTACATGAAGAA-TCCAATGGGACAACTTTTGAG 434 |||||||||||||||||||| |||| || |||||||| | ||||||||||||||||| Sbjct 255 CGAGGAGGAGACGGGCTTCACTGTTTATAGATGAAGAAGT-GAATGGGACAACTTTTGAT 313 Query 435 GTTGGCGCTGGTA-T--TGGCTCTCCAACAAGTATGGTTCATTTTGATTCTACCAACCCT 491 ||||||||||||| | |||||| | ||||||| | ||| | ||||||||||||||||| Sbjct 314 GTTGGCGCTGGTACTGCTGGCTCACGAACAAGTGTTGTTGAGCTTGATTCTACCAACCCT 373 Query 492 TCTTCTTCTAGTAAAAGTTCACAATCTCAAAATTTGAAAATCCGCAAGGTTAGGAATCAC 551 |||||| | ||||| |||||||||||||| ||||||||||||| |||||||| | Sbjct 374 TCTTCTCCGAGTAAGAGTTCACAATCTCATAATTTGAAAATCCACAAGGTTA-G------ 426 Query 552 AGGAATTCTGGATTCAAGAGTAGGGATCAAAGTCCTCAGAGGATAAAGGATCCTCCGCCT 611 | ||||||||||||||||||||||||||||||||| |||||| | ||||| | || ||| Sbjct 427 A--AATTCTGGATTCAAGAGTAGGGATCAAAGTCCTAAGAGGACACAGGAT-C-CC-CCT 481 Query 612 TTCGACATATGTTCTTCAGTCCTCGAAAGAAATGATACAAGTATAAAAGATTGGATTTTG 671 |||||||| ||||||||||||||| | || | |||| ||||| |||||| |||| Sbjct 482 TTCGACATTTGTTCTTCAGTCCTC----G--AT--T-CAAGCATAAACGATTGGGCTTTG 532 Query 672 GCGGATGAAACAAACAGAGAAACTGTTGAAGTTAGTAATAAACACAAAGTTATAAGGCCT 731 ||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| Sbjct 533 GCGGATGAAACAAACGGGGAAACTGTTGAAGTTAGTAATAAACACAGAGTTCTAAGGCCT 592 Query 732 GGAATGGTGCTTCTTAAAGACTTCCTTACGCCTGATATACAGGTTGACATTGTGAAAACA 791 ||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||| Sbjct 593 GGAATGGTGCTTCTTAAAGGCTTCCTTTCACATGATATACAGGTTGACATTGTGAAAACA 652 Query 792 TGCCGAGAACTTGGTGTTAAGCCCACAGGATTTTACCAACCGGGGTATAGTGTTGGTTCA 851 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 653 TGCCGAGAACTTGGTGTTAAGCCCGCAGGATTTTACCAACCGGGGTATAGAGTTGGTTCA 712 Query 852 AAGCTTCATCTGCAAATGATGTGCCTTGGGCGAAACTGGGATCCTCAGACTAAATACAGG 911 |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| Sbjct 713 AAGCTTCATCTGCAAATGATGTGCCTTGGGAGAAACTGGGATCCACAGACCAAGTACAGT 772 Query 912 AAAAACACTGACATTGATAGTAAAGCACCAGAGATCCCTGTCACATTTAATGTCTTGGTA 971 |||||||||||||| |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 773 AAAAACACTGACATAGATAGTAAAGCACCCGACATCCCTGTTGCATTTAGTGTCTTGGTA 832 Query 972 GAAAAGGCGATCCGAGAGGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 1031 || |||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 833 GAGGAGGCGATCCGGGAAGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 892 Query 1032 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAATTTCTACTCAGAAACT 1091 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 893 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAACTTCTACTCAGAAACT 952 Query 1092 GGAAGACTTGGTCTCCATCAGGACCGTGACGAAAGCGAAGAGAGTATAGCAAGAGGGTTG 1151 ||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||| Sbjct 953 GGAAGGCTTGGTCTCCATCAGGACCGTGACGAAAGCCAAGAGAGTATAGGAAAAGGGTTG 1012 Query 1152 CCGATAGTGTCCTTCTCCATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1211 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 CCGATAGTCTCCTTCTCGATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1072 Query 1212 GTAGAAGAAGCTCAAGGAGT 1231 ||||||||||| ||||||| Sbjct 1073 GTAGAAGAAGCAGAAGGAGT 1092 Score = 172 bits (93), Expect = 5e-42 Identities = 107/114 (94%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1285 TCCATGGCGTCAAGTCAATCATACCAAACTCAGCTCCCATGTCTCTACTCAACGAGTCCA 1344 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1092 TCCATGGCGTCAAGTCCATCATACCAAACTCAGCTCCCATGTCTCTACTCAATGAGTCCA 1151 Query 1345 AGCTCCGAACAGGACGTCTCAATCTTACTTTTAGGCATTTCTAATCATCTTTCA 1398 |||||||||| ||||||||||| ||||| ||||||||||||||||| | ||||| Sbjct 1152 AGCTCCGAACCGGACGTCTCAACCTTACGTTTAGGCATTTCTAATCTTATTTCA 1205 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55611757700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5