BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01790.1 Length=800 Score E Sequences producing significant alignments: (Bits) Value Ahg939481 jgi|Araly1|939481|scaffold_600025.1 843 0.0 > Ahg939481 jgi|Araly1|939481|scaffold_600025.1 Length=617 Score = 843 bits (456), Expect = 0.0 Identities = 567/619 (92%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 53 tctcactctccCAAGACAATAATGCCAAACGCGGGATCTGAGCGGGCAGCTTCACTCTCA 112 ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||| Sbjct 1 TCTCACTCTCCAAAGACAACAATGCCAAACGCGGGATCTGAGCGGGGAGCTTCACTGTCA 60 Query 113 CTGAAAAAGCAAGACACCGCCACCTTCTCCGGTAAGCTACCGTCGACCAAACAACG-TTT 171 |||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| Sbjct 61 CTGAGAAAGCAAGACACGGCCACCTTCTCCGGTAAGTTACCGTCGACCAAACAACGCTTT 120 Query 172 T--TCGTCGGTATC---AGC-T--GCTTGTCCTTCCTTTAGAATCTACTACTACGACGGA 223 | ||| ||| | | ||| | |||||||||||||||||||| ||||||||||||||| Sbjct 121 TCGTCGCCGGCAACAGGAGCATCAGCTTGTCCTTCCTTTAGAATTTACTACTACGACGGA 180 Query 224 GCCGCCGGTGCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCCTCC 283 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 GCCGCCGGTTCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCATCC 240 Query 284 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGC 343 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGT 300 Query 344 GACCAAATCCGCCGCCGTTCCAAAAAGTCCACCAAGAAAATCCTCGCACTAATCCCGAC- 402 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 GACCAAATCCGCCGCCGTTCCAAAAACTCCACCAAGAAAATCCTCGCACTAATCCCGACC 360 Query 403 AAGGCTCTTCTGGCTATCGGGCGATCACAATGGTAAGGCTAAGAAACTGTCGGCTTCATC 462 ||| ||||||| | ||||||||||||| | | | ||||| |||||||||||||| || || Sbjct 361 AAG-CTCTTCTAGTTATCGGGCGATCATAGTAGCAAGGCCAAGAAACTGTCGGCATCGTC 419 Query 463 ACCACCATCTCTGTCGGAGAGAGTGTTGATCGACGAAAATGAGTACGATCTGTTCAAGTT 522 |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 420 ACCACCATCTATGTCGGAGAGAGTGTTGATCGATGAGAATGAGTACGATCTGTTCAAGTT 479 Query 523 TCAAACAGAAAGGAATGTCATGCGAAGATTTTCATCCTTCGACTCTTCTGCTGACTACCC 582 ||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 TCAGTCGGAAAGGAACGTCATGCGAAGATTTTCATCCTTCGACTCTTCTACTGACTACCC 539 Query 583 AATTCAGAGATCACAATCCACTTCCTGCTTCGGAATCCGCAGATGTTTCCTCTGCTAATT 642 |||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||| Sbjct 540 CATTCAGAGATCACAATCCACCTCTTGCTTCGGAATCCGCAGATGTTTCATCTACTAATT 599 Query 643 CCGCT-GCAAAATTTGGAA 660 |||| | ||||| ||||| Sbjct 600 TCGCTAG-AAAATATGGAA 617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29545260675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5