BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01820.1 Length=1808 Score E Sequences producing significant alignments: (Bits) Value Ahg486886 jgi|Araly1|486886|fgenesh2_kg.6__20__AT5G01820.1 2444 0.0 Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1 250 3e-65 > Ahg486886 jgi|Araly1|486886|fgenesh2_kg.6__20__AT5G01820.1 Length=1785 Score = 2444 bits (1323), Expect = 0.0 Identities = 1613/1746 (92%), Gaps = 48/1746 (3%) Strand=Plus/Plus Query 1 ATCTCTTATCCGAAT-CC----TCCCAATTTGTCTGTCTCTCTTTTGTTTTCTCTGCTAA 55 ||||||||||||||| || | | || ||||| |||||||||||||||||||| ||| Sbjct 1 ATCTCTTATCCGAATCCCAATTTGTCTATCTGTCTCTCTCTCTTTTGTTTTCTCTGTTAA 60 Query 56 CAGATCTCT-CTAAATATCTGTTACTTTTGTTCATATCTTTTTACTT-TTCAAACTACTA 113 |||||||| |||||||||||||||||||||||||| |||||||| ||||||||| || Sbjct 61 AAGATCTCTAAAAAATATCTGTTACTTTTGTTCATATC-TTTTACTTGTTCAAACTATTA 119 Query 114 -ATTTTCCTTTCGCTTCTTCTATTAATA-AC-AACACTCTCTCTCTCAGACTTCTTTTCt 170 |||||||||||||||||||||||||| || |||||||||||||||||| | Sbjct 120 GTTTTTCCTTTCGCTTCTTCTATTAATATACAAACACTCTCTCTCTCAGA--------C- 170 Query 171 tttttttCTACGGCGTTGATTCATTCGC-A-----A---TGACCTCAGTTTCTGTGTACC 221 |||||||||||||||||||||||||| | | ||| |||| |||||| ||||| Sbjct 171 --TTTTTCTACGGCGTTGATTCATTCGCTATGTTTACGCTGAACTCATTTTCTGGGTACC 228 Query 222 ATAATTGACCTAGCAGATTCTGTTTTTAATGGTAGATTCTGACCCGGTGGAATTTCCGCC 281 ||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 229 GTAATTGACCAAGGAGATTCTG-TTTTAATGGTAGATTCTGACACGGTGGAATTTCCGCC 287 Query 282 GGAGAACCGCCGTGGACAGCTCTTCGGCAAATACGAGGTCGGAAAATTGGTGGGATGCGG 341 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 288 GGAGAACCGCCGTGGACAGCTCTTCGGTAAATACGAGGTCGGCAAATTGGTGGGATGCGG 347 Query 342 CGCCTTCGCGAAAGTGTACCACGGGAGGAGCACAGCGACGGGTCAGAGCGTTGCGATCAA 401 ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 348 CGCCTTCGCTAAAGTGTACCACGGGAGGAACACAGCGACGGGTCAGAGCGTCGCGATCAA 407 Query 402 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGACTCAATGGCAACATTCAGAGAGAGAT 461 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 408 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGCCTCAATGGCAACATTCAGAGGGAGAT 467 Query 462 CGCTATCATGCACCGTCTGCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 521 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 468 CGCTATCATGCACCGTCTCCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 527 Query 522 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAGGGCGGTGAGCTATTCGCCAAAGT 581 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 528 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAAGGCGGTGAGCTCTTCGCCAAAGT 587 Query 582 CTCCAAGGGCAGGTTCTGCGAGGATCTTAGCCGTCGTTATTTCCAGCAGCTCATCTCCGC 641 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 588 CTCCAAGGGCAGGTTCTGCGAGGATCTCAGCCGTCGCTATTTCCAGCAGCTCATCTCCGC 647 Query 642 CGTCGGATATTGCCACTCCCGCGGCATCTTTCACCGTGATCTCAAACCGGAGAATCTCCT 701 ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 648 CGTCGGATACTGCCACTCCCGCGGCATCTTTCACCGTGACCTCAAACCTGAGAATCTCCT 707 Query 702 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 767 Query 762 GATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCCGGCGTACGTGGCGCCTGA 821 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 768 GATCCGACCCGACGGCCTCCTCCACACCCTCTGTGGTACGCCGGCATACGTGGCGCCGGA 827 Query 822 GGTTTTGGCGAAGAAAGGGTACGACGGTGCTAAAATCGACATATGGTCATGTGGAATCAT 881 |||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 828 GGTTCTGGCGAAGAAAGGCTACGACGGTGCTAAAATCGACATTTGGTCATGCGGAATCAT 887 Query 882 ACTGTTCGTCCTCAACGCCGGTTATCTCCCTTTCAACGACCATAATCTCATGGTTATGTA 941 | |||| || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 888 ATTGTTTGTTCTCAACGCCGGTTATCTGCCTTTCAACGACCATAACCTCATGGTCATGTA 947 Query 942 CCGGAAAATCTACAAGGGAGAATTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1001 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 948 CCGGAAAATCTACAAGGGAGAGTTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1007 Query 1002 ACTGCTGACTCGGCTTTTAGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1061 ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 ACTTCTGACTCGGCTTCTCGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1067 Query 1062 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCTAAATTCCATCTAGAGGA 1121 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 1068 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCAAAATTCCACCTCGAGGA 1127 Query 1122 CTCCGATATGAAACTCCCGGCGGACGAGACCGACAGCGAGATGGGAGCAAGGAGGATGAA 1181 ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| Sbjct 1128 CTCCGATATGAAACTCCCGGCGGACGATATCGACGGCGAGATGGGAGCAAGGAGGATGAA 1187 Query 1182 CGCATTCGACATCATCTCAGGATCTCCAGGGTTCAATCTCTCCGGTCTTTTCGGAGACGC 1241 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 1188 CGCATTCGACATCATCTCAGGATCCCCAGGATTCAATCTCTCCGGTCTGTTCGGCGACGC 1247 Query 1242 CAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1307 Query 1302 GAGGCTGGAGGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGAAGAAGGAAACATGGGG 1361 || |||||| ||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct 1308 GAAGCTGGAAGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGGCGAAGGAGGCGTGGGG 1367 Query 1362 GATGAAGATCGAGGGGCAAAAAGGTAACTTCGCAATGGTGGTTGAGATAAACCAGCTAAC 1421 ||||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 1368 GATGAAGATTGAAGGGCAAAAAGGTAATTTCGCGATGGTGGTCGAGATAAACCAGCTAAC 1427 Query 1422 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGACAAAGAGCCGCTGCATCTGGACGAGA 1481 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1428 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGGCAAAGAGCCGCTGCATCTGGACGAGA 1487 Query 1482 TTTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAATCAGACCAAAC 1541 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1488 TCTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAACCAGACCAGAC 1547 Query 1542 GGACCCA---GAACCAACTCAAGTACATACGACGTCGTAGTTTAGGTATCTGTCAAA-TA 1597 |||||| |||||| ||| |||| ||||||||||||||||||||||||||||||| || Sbjct 1548 GGACCCTCCTGAACCATCTCTAGTAAATACGACGTCGTAGTTTAGGTATCTGTCAAAATA 1607 Query 1598 AATTATCCAAATAATAATTaaaaaaa-a-aTATCCCGGGTTATATGTAATTGCttttttt 1655 | |||||| |||||||||||||||| | |||||||||||||| |||||||| ||||||| Sbjct 1608 A-TTATCCCCATAATAATTAAAAAAATATATATCCCGGGTTATCTGTAATTGTTTTTTTT 1666 Query 1656 ttt-----ACCCGGAGAATATCTCTGACATAATTA-TT---CAGGAAATTTCTCGACAAA 1706 ||| ||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1667 TTTTTTTTACCCGGAGAATATCTCTGACATAATTAATTATTCAGGAAATTTCTCGACAAA 1726 Query 1707 TCTTAA 1712 |||||| Sbjct 1727 TCTTAA 1732 > Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1 Length=1689 Score = 250 bits (135), Expect = 3e-65 Identities = 398/522 (76%), Gaps = 30/522 (6%) Strand=Plus/Plus Query 452 AGAGAGAGATCGCTATCATGCACCGTCTGCGCCACCCTTC-TATCGTGCGCCTGTTCGAG 510 ||||||||||| || |||||| |||||| || || || || |||||||| ||| | ||| Sbjct 285 AGAGAGAGATCTCTGTCATGCGCCGTCTTCGTCATCC-TCATATCGTGCTCCTCTCCGAA 343 Query 511 GTCCTCGCCACCAA-ATCCAAGATCT-TCTTCGTCATGGAATTCGCCAAGGGCGGTGAGC 568 |||||||||||||| | | ||||||| | ||||||||||| | ||||| ||||| |||| Sbjct 344 GTCCTCGCCACCAAGA-CGAAGATCTAT-TTCGTCATGGAGCTAGCCAAAGGCGGCGAGC 401 Query 569 TATTCGCCAAAGTCTCCAAG-GGCAGGTTCTGC-GAGGA-TCTTAGCCGTCGTTATTTCC 625 | ||| ||| |||| | || | | ||| | || || ||| ||||| ||||||| Sbjct 402 TTTTCTCCAGAGTC-ACTAGCAACCGTTTC-ACGGA-GAGTCTCAGCCGGAAATATTTCC 458 Query 626 AGCAGCTCATCTCCGCCGTCG-GATATTGCCACTCCCGCGGCA-TCTTTCACCGTGATCT 683 |||| | ||||||||||| | |||| |||||| | | || | | |||||||||||| | Sbjct 459 GGCAGTTGATCTCCGCCGT-GAGATACTGCCACGCAAGAGG-AGTTTTTCACCGTGATTT 516 Query 684 CAAACCGGAGAATCTCCTCCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACT 743 ||||||||||||||||||||||||||||| | ||| ||||| | || || ||||| || Sbjct 517 GAAACCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAGACTTCGGTCT 576 Query 744 CAGCGCTCTTACCGATCAGATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCC 803 ||| || | | || ||||| || |||||||| | || ||||| || ||||| || || Sbjct 577 CAGTGCGATGAAGGAACAGATTCGTCCCGACGGGATGCTACACACGCTTTGTGGAACTCC 636 Query 804 GGCGTACGTGGCGCCTGAGGTT-TTGGCGAAGAAAGGGTACGACGGTGCTAAAA-TCGAC 861 ||| ||||| || || ||| || || ||||||||| ||||||||| ||||| | || Sbjct 637 GGCTTACGTTGCACCGGAGCTTCTTTT-GAAGAAAGGCTACGACGGTTCTAAAGCT-GAT 694 Query 862 ATATGGTCATGTGGAATCATACTGTTCGTCCTCAACGCCGGTTATCTC-CC-TTTCAACG 919 || |||||||| || || | ||||| | |||||||||||||| || || |||| | Sbjct 695 ATTTGGTCATGCGGCGTCGTTTTGTTCCTTCTCAACGCCGGTTA-CTTGCCGTTTCGT-G 752 Query 920 A-CCATAATC-TCATGGTTA-TGTACCGGAAAATCTACAAGG 958 | ||| || | |||||| | | |||||||||||| |||||| Sbjct 753 ATCCA-AA-CATCATGGG-ACTATACCGGAAAATCCACAAGG 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67876816590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5