BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01870.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892021 jgi|Araly1|892021|Al_scaffold_0006_17                      466    8e-131


> Ahg892021 jgi|Araly1|892021|Al_scaffold_0006_17
Length=351

 Score =  466 bits (252),  Expect = 8e-131
 Identities = 319/352 (91%), Gaps = 2/352 (1%)
 Strand=Plus/Plus

Query  58   atgatgagagTTGTGTTACCACTATGCCTGCTTCTTGCTTCCATATTTGCATGGGGTTCT  117
            |||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||
Sbjct  1    ATGATGAGAGTTGTGTTACCGCTATGCCTGCTTCTTGCTTCCATGTTTGCAAGAGGTTCT  60

Query  118  GAAGCAGCCATATCTTGCAACGCCGTACAGGCCAACCTTTACCCGTGCGTTGTGTACGTG  177
            ||||||||| | ||||||||||| ||||||||| |||||||||||||| ||| |||||||
Sbjct  61   GAAGCAGCCGTGTCTTGCAACGCGGTACAGGCCGACCTTTACCCGTGCCTTGCGTACGTG  120

Query  178  GTGCAGGGAGGAGCCATTCCGTATAGCTGTTGCAATGGCATCAGGATGCTC-AGCAAACA  236
            ||||||||||||  ||||||| | ||||||||||  ||||||||||||||| ||| ||||
Sbjct  121  GTGCAGGGAGGAAACATTCCGCAAAGCTGTTGCACGGGCATCAGGATGCTCAAGC-AACA  179

Query  237  GGCAACTAGCGCATCAGACAAACAAGGTGTGTGTCGCTGCATCAAGTCTGTGGTGGGAAG  296
            |||||  ||||||||||| |  |||| ||||||||||||||||||||||| |||||||||
Sbjct  180  GGCAAAGAGCGCATCAGATAGGCAAGTTGTGTGTCGCTGCATCAAGTCTGCGGTGGGAAG  239

Query  297  AGTGTCTTACTCGTCAATCTATCTCAAGAAAGCTGCTGCTTTGCCAGGCAAGTGCGGTGT  356
            |||||| |||||||||| |||||||||||| |||||  ||||||||||||||||||||||
Sbjct  240  AGTGTCATACTCGTCAACCTATCTCAAGAATGCTGCCACTTTGCCAGGCAAGTGCGGTGT  299

Query  357  CAAACTTCCTTACAAGATCGACCCTTCCACCAACTGCAACAGCATTAAGTGA  408
            ||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct  300  CAAACTTCCATACAATATCGACCCTTCCACCAACTGCAACAGCATTAAATGA  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5