BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01870.1 Length=550 Score E Sequences producing significant alignments: (Bits) Value Ahg892021 jgi|Araly1|892021|Al_scaffold_0006_17 466 8e-131 > Ahg892021 jgi|Araly1|892021|Al_scaffold_0006_17 Length=351 Score = 466 bits (252), Expect = 8e-131 Identities = 319/352 (91%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 58 atgatgagagTTGTGTTACCACTATGCCTGCTTCTTGCTTCCATATTTGCATGGGGTTCT 117 |||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||| Sbjct 1 ATGATGAGAGTTGTGTTACCGCTATGCCTGCTTCTTGCTTCCATGTTTGCAAGAGGTTCT 60 Query 118 GAAGCAGCCATATCTTGCAACGCCGTACAGGCCAACCTTTACCCGTGCGTTGTGTACGTG 177 ||||||||| | ||||||||||| ||||||||| |||||||||||||| ||| ||||||| Sbjct 61 GAAGCAGCCGTGTCTTGCAACGCGGTACAGGCCGACCTTTACCCGTGCCTTGCGTACGTG 120 Query 178 GTGCAGGGAGGAGCCATTCCGTATAGCTGTTGCAATGGCATCAGGATGCTC-AGCAAACA 236 |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||| |||| Sbjct 121 GTGCAGGGAGGAAACATTCCGCAAAGCTGTTGCACGGGCATCAGGATGCTCAAGC-AACA 179 Query 237 GGCAACTAGCGCATCAGACAAACAAGGTGTGTGTCGCTGCATCAAGTCTGTGGTGGGAAG 296 ||||| ||||||||||| | |||| ||||||||||||||||||||||| ||||||||| Sbjct 180 GGCAAAGAGCGCATCAGATAGGCAAGTTGTGTGTCGCTGCATCAAGTCTGCGGTGGGAAG 239 Query 297 AGTGTCTTACTCGTCAATCTATCTCAAGAAAGCTGCTGCTTTGCCAGGCAAGTGCGGTGT 356 |||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct 240 AGTGTCATACTCGTCAACCTATCTCAAGAATGCTGCCACTTTGCCAGGCAAGTGCGGTGT 299 Query 357 CAAACTTCCTTACAAGATCGACCCTTCCACCAACTGCAACAGCATTAAGTGA 408 ||||||||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 300 CAAACTTCCATACAATATCGACCCTTCCACCAACTGCAACAGCATTAAATGA 351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20069839814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5