BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01880.1 Length=1355 Score E Sequences producing significant alignments: (Bits) Value Ahg939472 jgi|Araly1|939472|scaffold_600016.1 780 0.0 Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014 268 6e-71 > Ahg939472 jgi|Araly1|939472|scaffold_600016.1 Length=518 Score = 780 bits (422), Expect = 0.0 Identities = 490/522 (94%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 100 GACGCCGGAGACTCATCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 159 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GACACCGGAGACTCCTCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 62 Query 160 GACGAGCGGAAGCGGCGGGGGAGATGGGTACAC-GAGGGACATGAACTTCGACGCAAACA 218 ||||||| | ||||||| |||||||||||| | ||| |||||||||||||||||||||| Sbjct 63 GACGAGC-G--GCGGCGGCGGAGATGGGTAC-CTGAGAGACATGAACTTCGACGCAAACA 118 Query 219 TGGTGATCATACTTGCGGCTCTTCTCTGCGCGCTGATACTAGCGCTTGGGCTGAATTCGA 278 |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| Sbjct 119 TGGTGATCATACTTGCAGCTCTTCTGTGCGCGTTGATACTAGCGCTTGGGCTGAATTCGA 178 Query 279 TTCTCCGGTGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCGGGGACGG 338 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 179 TTCTCCGATGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCAGGGACGG 238 Query 339 TGGCCGACAG-AGCTGGATTAAAGAAGAGAGAACTGAAGAAGTTTCCAGTAGCTGAGTAC 397 |||||||||| || |||||| ||||||||||| |||||||||||||| ||||||| |||| Sbjct 239 TGGCCGACAGAAG-TGGATTGAAGAAGAGAGAGCTGAAGAAGTTTCCTGTAGCTGCGTAC 297 Query 398 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAGTGCGCAATCTGTCTGGGGGAATTCGCG 457 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct 298 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAATGCGCAATCTGTTTGGGAGAATTCGCG 357 Query 458 GACGGCGAGAGAGTGCGAGTACTGCCGCCGTGTAATCACAGTTTCCACATGTCATGCATC 517 ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct 358 GACGGCGAGAGAGTGAGAGTTCTGCCGCCGTGTAATCACAGCTTCCACATGTCATGCATC 417 Query 518 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGCATTCACTCATCGAGGTC 577 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 418 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGTATTCACTCATCGAGGTC 477 Query 578 CACGTGGCGGGGTCTGAGTGATTTAATTATCGTCGCGAGGGT 619 ||||||| ||| || |||||||||||||||||||| | |||| Sbjct 478 CACGTGGTGGGATCAGAGTGATTTAATTATCGTCGTG-GGGT 518 > Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014 Length=378 Score = 268 bits (145), Expect = 6e-71 Identities = 275/332 (83%), Gaps = 31/332 (9%) Strand=Plus/Plus Query 989 TGGTGTGGAAGCTTAAAGTATGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCAATATAC 1048 |||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 2 TGGTGTGGAAGCTTGAAGTAAGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCCATCTAC 61 Query 1049 GGAACAAGCTCTCGCTTCATCGATGGTCAATCCTCTTAAGATTCCGAAAGCATCA---TC 1105 ||||| | |||||| ||| |||| |||||||||||||||||||||||||||||| || Sbjct 62 GGAACCGGATCTCGCATCAACGATTGTCAATCCTCTTAAGATTCCGAAAGCATCAGCATC 121 Query 1106 ATCATCTCAAATCCAAAC-CGTCCGATTG-GGTCAGATTCCGACGGAGTCTTTTTGCTCT 1163 |||||||||||||||||| | || ||||| || ||||| || |||||||||| ||||||| Sbjct 122 ATCATCTCAAATCCAAACAC-TCAGATTGCGG-CAGATGCCTACGGAGTCTTCTTGCTCT 179 Query 1164 CTTCCGTGGACGAAAACAGAGGGAAGTGGATACGAAGAAGAAACTCATCAAATTGGTTAG 1223 ||||||| ||||||||| | | ||| | | ||| | |||||| || ||||| | Sbjct 180 CTTCCGTAGACGAAAAC-G-G--AAG---A-A-GAA-A-----CTCATCGAACTGGTTTG 224 Query 1224 GAATCGAGCGGTGGTAGTGGCAAAGAAAGCAAAAGGCGTTGGTGTTGTGGTTACTCTCAT 1283 |||||||||||||| |||||||||||| |||||| |||||||||||||| ||||| Sbjct 225 GAATCGAGCGGTGG------CAAAGAAAGCAAGAGGCGTGGGTGTTGTGGTTACCCTCAT 278 Query 1284 CATCGT---CGTCATCAATTTTCTAGTCCCAT 1312 | |||| | ||||||||| |||| | |||| Sbjct 279 CCTCGTAATCATCATCAATTATCTACTGCCAT 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50703479610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5