BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01960.1 Length=1807 Score E Sequences producing significant alignments: (Bits) Value Ahg892011 jgi|Araly1|892011|Al_scaffold_0006_7 2008 0.0 Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1 89.8 6e-17 > Ahg892011 jgi|Araly1|892011|Al_scaffold_0006_7 Length=1290 Score = 2008 bits (1087), Expect = 0.0 Identities = 1230/1296 (95%), Gaps = 21/1296 (2%) Strand=Plus/Plus Query 333 ATGGAAACGCCCGGCGCCAGTCATGATTCATTTAGGGGTTCTCCTCGTAGAAACTCCATC 392 |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGAAACGCCCGGCGGCAATCATGATTCCTTTAGGGGTTCTCCTCGTAGAAACTCCATC 60 Query 393 CTCTCTGCTTCTAACATCATCCAGGCCCCTATTTCTACCTTGTTAGAGTATTCGGGTCTC 452 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 CTCTCTGCTTCTAACATCATCCAGGCCCCCATTTCTACCTTGTTAGAGTATTCGGGTCTC 120 Query 453 TTTCG-AGCTAGGCC-AAGTCCTAGTCATGAGGCTGAGACGCTTGTTAGTGATGATTCTT 510 ||||| | ||||||| || ||||||||| |||||||| ||||| || ||||||||||||| Sbjct 121 TTTCGCA-CTAGGCCTAA-TCCTAGTCACGAGGCTGAAACGCTGGTCAGTGATGATTCTT 178 Query 511 CAGGACTCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACACCGAGCAGGATGCTG 570 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 179 CAGGAATCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACGGGGAGCAGGATCCTG 238 Query 571 AAACTGATACCAATGCTCTGAGGGAA-----C--CC--GGACACTCTGAACTCTTGGGTT 621 ||||||||| ||||| ||| |||||| | || |||||| ||||||| ||||||| Sbjct 239 AAACTGATAGCAATGGTCTCAGGGAACCCGGCGGCCTTGGACACACTGAACTTTTGGGTT 298 Query 622 CTTCTGCTACTCAGGTTGATCCCATGGGAGGTGCT--T-CAGAAGGTGCCTCTCAGGCTG 678 | || ||||||||||||||||||| ||||||||| | |||||||||||||||||| || Sbjct 299 C-TC--CTACTCAGGTTGATCCCATAGGAGGTGCTCCTGCAGAAGGTGCCTCTCAGGATG 355 Query 679 CTCCAGGTG-ATCCTGCTGCTGGAGACGCCGCTTCCCGGGATTCGCCTTACCAAAGATAT 737 |||| |||| || ||| |||||||||||||||| |||||||||| ||||||||||||||| Sbjct 356 CTCCTGGTGAAT-CTGTTGCTGGAGACGCCGCTACCCGGGATTCACCTTACCAAAGATAT 414 Query 738 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 474 Query 798 GTTGTTTTTATCCGCCAGCATTTGCAGGGGTTCTTTGTCGCCATTTGGATTGCTGCTGTC 857 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 475 GTTGTTTTTATCCGTCAGCATTTGCAGGGGTTCTTTGTCGCTATTTGGATTGCTGCTGTC 534 Query 858 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTGAAGGGTGAGAGGCATATC 917 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 535 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTAAAGGGTGAGAGGCATATC 594 Query 918 TCGGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 977 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TCTGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 654 Query 978 TTTCGGAAGGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 1037 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 TTTAGGAAAGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 714 Query 1038 TTCTGGCATGCCATTTTTATCATAGTGGTGAATGATACACTTGTCCGGCAGGCCTCAATG 1097 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 715 TTCTGGCATGCCATTTTTATCATAGTGGTTAATGATACACTTGTCCGACAGGCCTCAATG 774 Query 1098 ATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAA 1157 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 775 ATTTTCAAGTGTTTTCTGTTGATGTACTACAAAAACAGTAGGGGTCGAAATTATCGTAAA 834 Query 1158 CAGGGTCAATTGCTAACTTTGGTTGAATATTTCATGCTTCTGTATCGCTCTTTACTGCCT 1217 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 835 CAGGGTCAATTGCTAACTTTGGTTGAATATTTGATGCTTTTGTATCGCTCTTTACTGCCT 894 Query 1218 ACCCCTGTATGGTACCGTTTCTTTTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 1277 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 895 ACCCCTGTATGGTACCGTTTCTTCTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 954 Query 1278 ATGACGGGATTGTATCTTACATTCAAGCTCACTTCAGTAGTTGAGAAGGTTCAATCCTTC 1337 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 955 ATGACGGGATTATATCTTACATTCAAGCTCACTTCAGTTGTTGAGAAGGTTCAATCCTTC 1014 Query 1338 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCACTACGGATCATATGCAACTACA 1397 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1015 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCATTACGGATCATATGCAACTACA 1074 Query 1398 GAGCAGGTAAATGCAGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1457 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 GAGCAGGTAAATGCGGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1134 Query 1458 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCAGAGTGGTTTGAGAGA 1517 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1135 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCGGAGTGGTTTGAGAGA 1194 Query 1518 GAGAGGACGTGTCCTTTGTGCAGGGCCTTGGTCAAACCAGCAGATCTGAAATCATTCGGT 1577 ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1195 GAGAGAACGTGTCCTCTGTGCAGGGCCTTGGTCAAACCAGCAGATCTAAAATCATTCGGT 1254 Query 1578 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1613 |||||||||||||||||||||||||||||||||||| Sbjct 1255 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1290 > Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1 Length=1403 Score = 89.8 bits (48), Expect = 6e-17 Identities = 60/65 (92%), Gaps = 4/65 (6%) Strand=Plus/Minus Query 1743 AAGATGTTCATACTATGTCATTTGTTAATATGAATGAAATCGCCTTTTATATTCCGTTGC 1802 |||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||| Sbjct 1403 AAGATGTTCATACTATGTCATTTGTT-A-AT--ATGAAATAGCCTTTTATATTCCGTTGC 1348 Query 1803 AAAAA 1807 ||||| Sbjct 1347 AAAAA 1343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67838726345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5